Search Results - "Ko, MSH"

Database for mRNA Half-Life of 19 977 Genes Obtained by DNA Microarray Analysis of Pluripotent and Differentiating Mouse Embryonic Stem Cells by Sharova, Lioudmila V., Sharov, Alexei A., Nedorezov, Timur, Piao, Yulan, Shaik, Nabeebi, Ko, Minoru S.H.

“…Degradation of mRNA is one of the key processes that control the steady-state level of gene expression. However, the rate of mRNA decay for the majority of…”
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Dynamics of Global Gene Expression Changes during Mouse Preimplantation Development by Hamatani, Toshio, Carter, Mark G., Sharov, Alexei A., Ko, Minoru S.H.

“…Understanding preimplantation development is important both for basic reproductive biology and for practical applications including regenerative medicine and…”
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Age-associated alteration of gene expression patterns in mouse oocytes by Hamatani, Toshio, Falco, Geppino, Carter, Mark G., Akutsu, Hidenori, Stagg, Carole A., Sharov, Alexei A., Dudekula, Dawood B., VanBuren, Vincent, Ko, Minoru S.H.

“…Decreasing oocyte competence with maternal aging is a major factor in human infertility. To investigate the age-dependent molecular changes in a mouse model,…”
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A web-based tool for principal component and significance analysis of microarray data by Sharov, Alexei A., Dudekula, Dawood B., Ko, Minoru S. H.

“…We have developed a program for microarray data analysis, which features the false discovery rate for testing statistical significance and the principal…”
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Loss of Imprinting of Igf2 Alters Intestinal Maturation and Tumorigenesis in Mice by Sakatani, Takashi, Kaneda, Atsushi, Iacobuzio-Donahue, Christine A, Carter, Mark G, de Boom Witzel, Sten, Okano, Hideyuki, Ko, Minoru S. H, Ohlsson, Rolf, Longo, Dan L, Feinberg, Andrew P

“…Loss of imprinting (LOI) of the insulin-like growth factor II gene (IGF2) is an epigenetic alteration that results in a modest increase in IGF2 expression, and…”
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Global Gene Expression Analysis Identifies Molecular Pathways Distinguishing Blastocyst Dormancy and Activation by Hamatani, Toshio, Daikoku, Takiko, Wang, Haibin, Matsumoto, Hiromichi, Carter, Mark G., Minoru S. H. Ko, Dey, Sudhansu K., Yanagimachi, Ryuzo

“…Delayed implantation (embryonic diapause) occurs when the embryo at the blastocyst stage achieves a state of suspended animation. During this period,…”
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O▪65 Genes, genes, and more genes by Ko, MSH

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Gene expression changes at metamorphosis induced by thyroid hormone in Xenopus laevis tadpoles by Das, Biswajit, Cai, Liquan, Carter, Mark G., Piao, Yu-Lan, Sharov, Alexei A., Ko, Minoru S.H., Brown, Donald D.

“…Thyroid hormone (TH) controlled gene expression profiles have been studied in the tail, hind limb and brain tissues during TH-induced and spontaneous Xenopus…”
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Identification of target genes and a unique cis element regulated by IRF-8 in developing macrophages by Tamura, Tomohiko, Thotakura, Pratima, Tanaka, Tetsuya S., Ko, Minoru S.H., Ozato, Keiko

“…Interferon regulatory factor-8 (IRF-8)/interferon consensus sequence–binding protein (ICSBP) is a transcription factor that controls myeloid-cell development…”
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Gene expression profiling of embryo-derived stem cells reveals candidate genes associated with pluripotency and lineage specificity by Tanaka, Tetsuya S, Kunath, Tilo, Kimber, Wendy L, Jaradat, Saied A, Stagg, Carole A, Usuda, Masayuki, Yokota, Takashi, Niwa, Hitoshi, Rossant, Janet, Ko, Minoru S H

“…Large-scale gene expression profiling was performed on embryo-derived stem cell lines to identify molecular signatures of pluripotency and lineage specificity…”
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Enhanced sensitivity to IGF-II signaling links loss of imprinting of IGF2 to increased cell proliferation and tumor risk by Kaneda, Atsushi, Wang, Chiaochun J, Cheong, Raymond, Timp, Winston, Onyango, Patrick, Wen, Bo, Iacobuzio-Donahue, Christine A, Ohlsson, Rolf, Andraos, Rita, Pearson, Mark A, Sharov, Alexei A, Longo, Dan L, Ko, Minoru S.H, Levchenko, Andre, Feinberg, Andrew P

“…Loss of imprinting (LOI) of the insulin-like growth factor-II gene (IGF2), leading to abnormal activation of the normally silent maternal allele, is a common…”
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Genome-Wide Expression Profiling of Mid-Gestation Placenta and Embryo Using a 15,000 Mouse Developmental cDNA Microarray by Tanaka, Tetsuya S., Jaradat, Saied A., Lim, Meng K., Kargul, George J., Wang, Xiaohong, Grahovac, Marija J., Pantano, Serafino, Sano, Yuri, Piao, Yulan, Nagaraja, Ramaiah, Doi, Hirofumi, Wood, William H., Becker, Kevin G., Minoru S. H. Ko

“…cDNA microarray technology has been increasingly used to monitor global gene expression patterns in various tissues and cell types. However, applications to…”
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Transcriptome analysis of mouse stem cells and early embryos by Sharov, Alexei A, Piao, Yulan, Matoba, Ryo, Dudekula, Dawood B, Qian, Yong, VanBuren, Vincent, Falco, Geppino, Martin, Patrick R, Stagg, Carole A, Bassey, Uwem C, Wang, Yuxia, Carter, Mark G, Hamatani, Toshio, Aiba, Kazuhiro, Akutsu, Hidenori, Sharova, Lioudmila, Tanaka, Tetsuya S, Kimber, Wendy L, Yoshikawa, Toshiyuki, Jaradat, Saied A, Pantano, Serafino, Nagaraja, Ramaiah, Boheler, Kenneth R, Taub, Dennis, Hodes, Richard J, Longo, Dan L, Schlessinger, David, Keller, Jonathan, Klotz, Emily, Kelsoe, Garnett, Umezawa, Akihiro, Vescovi, Angelo L, Rossant, Janet, Kunath, Tilo, Hogan, Brigid L M, Curci, Anna, D'Urso, Michele, Kelso, Janet, Hide, Winston, Ko, Minoru S H

“…Understanding and harnessing cellular potency are fundamental in biology and are also critical to the future therapeutic use of stem cells. Transcriptome…”
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Transcript copy number estimation using a mouse whole-genome oligonucleotide microarray by Carter, Mark G, Sharov, Alexei A, VanBuren, Vincent, Dudekula, Dawood B, Carmack, Condie E, Nelson, Charlie, Ko, Minoru S H

“…The ability to quantitatively measure the expression of all genes in a given tissue or cell with a single assay is an exciting promise of gene-expression…”
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Plac8 and Plac9, novel placental-enriched genes identified through microarray analysis by Galaviz-Hernandez, Carlos, Stagg, Carole, de Ridder, Gustaaf, Tanaka, Tetsuya S., Ko, Minoru S.H., Schlessinger, David, Nagaraja, Ramaiah

“…Microarray expression profiling of a collection of 15,000 mouse genes with placental and embryonic RNAs revealed candidates for placental-enriched genes, three…”
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Embryogenomics: developmental biology meets genomics by Ko, Minoru S.H.

“…Fundamental questions in developmental biology are: what genes are expressed, where and when they are expressed, what is the level of expression and how are…”
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Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development by Ko, M S, Kitchen, J R, Wang, X, Threat, T A, Hasegawa, A, Sun, T, Grahovac, M J, Kargul, G J, Lim, M K, Cui, Y, Sano, Y, Tanaka, T, Liang, Y, Mason, S, Paonessa, P D, Sauls, A D, DePalma, G E, Sharara, R, Rowe, L B, Eppig, J, Morrell, C, Doi, H

“…Little is known about gene action in the preimplantation events that initiate mammalian development. Based on cDNA collections made from each stage from egg to…”
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Genome-wide assembly and analysis of alternative transcripts in mouse by Sharov, Alexei A, Dudekula, Dawood B, Ko, Minoru S H

“…To build a mouse gene index with the most comprehensive coverage of alternative transcription/splicing (ATS), we developed an algorithm and a fully automated…”
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Mouse ovary developmental RNA and protein markers from gene expression profiling by Herrera, Luisa, Ottolenghi, Chris, Garcia-Ortiz, J. Elias, Pellegrini, Massimo, Manini, Francesca, Ko, Minoru S.H., Nagaraja, Ramaiah, Forabosco, Antonino, Schlessinger, David

“…To identify genes involved in morphogenetic events during mouse ovary development, we started with microarray analyses of whole organ RNA. Transcripts for 60%…”
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Expression Profiling of Placentomegaly Associated with Nuclear Transplantation of Mouse ES Cells by Suemizu, Hiroshi, Aiba, Kazuhiro, Yoshikawa, Toshiyuki, Sharov, Alexei A., Shimozawa, Nobuhiro, Tamaoki, Norikazu, Ko, Minoru S.H.

“…Transplantation of nuclei (NT) from engineered mouse ES cells is a potentially powerful and rapid route to create knockout mice, obviating the need for matings…”
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