Search Results - "Klopp, Christophe"

D-GENIES: dot plot large genomes in an interactive, efficient and simple way by Cabanettes, Floréal, Klopp, Christophe

“…Dot plots are widely used to quickly compare sequence sets. They provide a synthetic similarity overview, highlighting repetitions, breaks and inversions…”
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Reconstructing the genome of the most recent common ancestor of flowering plants by Murat, Florent, Armero, Alix, Pont, Caroline, Klopp, Christophe, Salse, Jérôme

“…Jérôme Salse and colleagues report a reconstruction of the most recent common ancestor of modern monocots and eudicots, which dates to the late Triassic era…”
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Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets by Asma, Zened, Sylvie, Combes, Laurent, Cauquil, Jérôme, Mariette, Christophe, Klopp, Olivier, Bouchez, Annabelle, Troegeler-Meynadier, Francis, Enjalbert

“…Abstract To provide a comprehensive examination of the bacterial diversity in the rumen content of cows fed different diets, high-throughput 16S rRNA…”
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Genetics of nodulation in Aeschynomene evenia uncovers mechanisms of the rhizobium–legume symbiosis by Quilbé, Johan, Lamy, Léo, Brottier, Laurent, Leleux, Philippe, Fardoux, Joël, Rivallan, Ronan, Benichou, Thomas, Guyonnet, Rémi, Becana, Manuel, Villar, Irene, Garsmeur, Olivier, Hufnagel, Bárbara, Delteil, Amandine, Gully, Djamel, Chaintreuil, Clémence, Pervent, Marjorie, Cartieaux, Fabienne, Bourge, Mickaël, Valentin, Nicolas, Martin, Guillaume, Fontaine, Loïc, Droc, Gaëtan, Dereeper, Alexis, Farmer, Andrew, Libourel, Cyril, Nouwen, Nico, Gressent, Frédéric, Mournet, Pierre, D’Hont, Angélique, Giraud, Eric, Klopp, Christophe, Arrighi, Jean-François

“…Among legumes (Fabaceae) capable of nitrogen-fixing nodulation, several Aeschynomene spp. use a unique symbiotic process that is independent of Nod factors and…”
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Biological rhythms in the deep-sea hydrothermal mussel Bathymodiolus azoricus by Mat, Audrey M., Sarrazin, Jozée, Markov, Gabriel V., Apremont, Vincent, Dubreuil, Christine, Eché, Camille, Fabioux, Caroline, Klopp, Christophe, Sarradin, Pierre-Marie, Tanguy, Arnaud, Huvet, Arnaud, Matabos, Marjolaine

“…Biological rhythms are a fundamental property of life. The deep ocean covers 66% of our planet surface and is one of the largest biomes. The deep sea has long…”
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Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation by Pan, Qiaowei, Feron, Romain, Yano, Ayaka, Guyomard, René, Jouanno, Elodie, Vigouroux, Estelle, Wen, Ming, Busnel, Jean-Mickaël, Bobe, Julien, Concordet, Jean-Paul, Parrinello, Hugues, Journot, Laurent, Klopp, Christophe, Lluch, Jérôme, Roques, Céline, Postlethwait, John, Schartl, Manfred, Herpin, Amaury, Guiguen, Yann

“…Teleost fishes, thanks to their rapid evolution of sex determination mechanisms, provide remarkable opportunities to study the formation of sex chromosomes and…”
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Analysis of large 16S rRNA Illumina data sets: Impact of singleton read filtering on microbial community description by Auer, Lucas, Mariadassou, Mahendra, O'Donohue, Michael, Klopp, Christophe, Hernandez‐Raquet, Guillermina

“…Next‐generation sequencing technologies give access to large sets of data, which are extremely useful in the study of microbial diversity based on 16S rRNA…”
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Gonad transcriptome analysis of pearl oyster Pinctada margaritifera: identification of potential sex differentiation and sex determining genes by Teaniniuraitemoana, Vaihiti, Huvet, Arnaud, Levy, Peva, Klopp, Christophe, Lhuillier, Emeline, Gaertner-Mazouni, Nabila, Gueguen, Yannick, Le Moullac, Gilles

“…Black pearl farming is based on culture of the blacklip pearl oyster Pinctada margaritifera (Mollusca, lophotrochozoa), a protandrous hermaphrodite species. At…”
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Whole genome sequencing reveals signals of adaptive admixture in Creole cattle by Ben-Jemaa, Slim, Adam, Gabriele, Boussaha, Mekki, Bardou, Philippe, Klopp, Christophe, Mandonnet, Nathalie, Naves, Michel

“…The Creole cattle from Guadeloupe (GUA) are well adapted to the tropical environment. Its admixed genome likely played an important role in such adaptation…”
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Contrasting Gene Decay in Subterranean Vertebrates: Insights from Cavefishes and Fossorial Mammals by Policarpo, Maxime, Fumey, Julien, Lafargeas, Philippe, Naquin, Delphine, Thermes, Claude, Naville, Magali, Dechaud, Corentin, Volff, Jean-Nicolas, Cabau, Cedric, Klopp, Christophe, Møller, Peter Rask, Bernatchez, Louis, García-Machado, Erik, Rétaux, Sylvie, Casane, Didier

“…Abstract Evolution sometimes proceeds by loss, especially when structures and genes become dispensable after an environmental shift relaxes functional…”
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Whole-genome sequencing of Aspergillus tubingensis G131 and overview of its secondary metabolism potential by Choque, Elodie, Klopp, Christophe, Valiere, Sophie, Raynal, José, Mathieu, Florence

“…Black Aspergilli represent one of the most important fungal resources of primary and secondary metabolites for biotechnological industry. Having several black…”
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The genome of the ant Tetramorium bicarinatum reveals a tandem organization of venom peptides genes allowing the prediction of their regulatory and evolutionary profiles by Touchard, Axel, Barassé, Valentine, Malgouyre, Jean-Michel, Treilhou, Michel, Klopp, Christophe, Bonnafé, Elsa

“…Venoms have evolved independently over a hundred times in the animal kingdom to deter predators and/or subdue prey. Venoms are cocktails of various secreted…”
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An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues by Jehl, Frédéric, Muret, Kévin, Bernard, Maria, Boutin, Morgane, Lagoutte, Laetitia, Désert, Colette, Dehais, Patrice, Esquerré, Diane, Acloque, Hervé, Giuffra, Elisabetta, Djebali, Sarah, Foissac, Sylvain, Derrien, Thomas, Pitel, Frédérique, Zerjal, Tatiana, Klopp, Christophe, Lagarrigue, Sandrine

“…Long non-coding RNAs (LNC) regulate numerous biological processes. In contrast to human, the identification of LNC in farm species, like chicken, is still…”
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Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens by Feron, Romain, Zahm, Margot, Cabau, Cédric, Klopp, Christophe, Roques, Céline, Bouchez, Olivier, Eché, Camille, Valière, Sophie, Donnadieu, Cécile, Haffray, Pierrick, Bestin, Anastasia, Morvezen, Romain, Acloque, Hervé, Euclide, Peter T., Wen, Ming, Jouano, Elodie, Schartl, Manfred, Postlethwait, John H., Schraidt, Claire, Christie, Mark R., Larson, Wesley A., Herpin, Amaury, Guiguen, Yann

“…Yellow perch, Perca flavescens, is an ecologically and economically important species native to a large portion of the northern United States and southern…”
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A candidate sex determination locus in amphibians which evolved by structural variation between X- and Y-chromosomes by Kuhl, Heiner, Tan, Wen Hui, Klopp, Christophe, Kleiner, Wibke, Koyun, Baturalp, Ciorpac, Mitica, Feron, Romain, Knytl, Martin, Kloas, Werner, Schartl, Manfred, Winkler, Christoph, Stöck, Matthias

“…Most vertebrates develop distinct females and males, where sex is determined by repeatedly evolved environmental or genetic triggers. Undifferentiated sex…”
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Soluble CD14 produced by bovine mammary epithelial cells modulates their response to full length LPS by Védrine, Mégane, Gilbert, Florence B, Maman, Sarah, Klopp, Christophe, Gitton, Christophe, Rainard, Pascal, Germon, Pierre

“…Bovine mastitis remains a major disease in cattle world-wide. In the mammary gland, mammary epithelial cells (MEC) are sentinels equipped with receptors…”
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Design and characterization of a 52K SNP chip for goats by Tosser-Klopp, Gwenola, Bardou, Philippe, Bouchez, Olivier, Cabau, Cédric, Crooijmans, Richard, Dong, Yang, Donnadieu-Tonon, Cécile, Eggen, André, Heuven, Henri C M, Jamli, Saadiah, Jiken, Abdullah Johari, Klopp, Christophe, Lawley, Cynthia T, McEwan, John, Martin, Patrice, Moreno, Carole R, Mulsant, Philippe, Nabihoudine, Ibouniyamine, Pailhoux, Eric, Palhière, Isabelle, Rupp, Rachel, Sarry, Julien, Sayre, Brian L, Tircazes, Aurélie, Jun Wang, Wang, Wen, Zhang, Wenguang

“…The success of Genome Wide Association Studies in the discovery of sequence variation linked to complex traits in humans has increased interest in high…”
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High‐resolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly by Bartholomé, Jérôme, Mandrou, Eric, Mabiala, André, Jenkins, Jerry, Nabihoudine, Ibouniyamine, Klopp, Christophe, Schmutz, Jeremy, Plomion, Christophe, Gion, Jean‐Marc

“…Genetic maps are key tools in genetic research as they constitute the framework for many applications, such as quantitative trait locus analysis, and support…”
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The rise and fall of the ancient northern pike master sex-determining gene by Pan, Qiaowei, Feron, Romain, Jouanno, Elodie, Darras, Hugo, Herpin, Amaury, Koop, Ben, Rondeau, Eric, Goetz, Frederick W, Larson, Wesley A, Bernatchez, Louis, Tringali, Mike, Curran, Stephen S, Saillant, Eric, Denys, Gael Pj, von Hippel, Frank A, Chen, Songlin, López, J Andrés, Verreycken, Hugo, Ocalewicz, Konrad, Guyomard, Rene, Eche, Camille, Lluch, Jerome, Roques, Celine, Hu, Hongxia, Tabor, Roger, DeHaan, Patrick, Nichols, Krista M, Journot, Laurent, Parrinello, Hugues, Klopp, Christophe, Interesova, Elena A, Trifonov, Vladimir, Schartl, Manfred, Postlethwait, John, Guiguen, Yann

“…The understanding of the evolution of variable sex determination mechanisms across taxa requires comparative studies among closely related species. Following…”
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Enriched atlas of lncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues by Degalez, Fabien, Charles, Mathieu, Foissac, Sylvain, Zhou, Haijuan, Guan, Dailu, Fang, Lingzhao, Klopp, Christophe, Allain, Coralie, Lagoutte, Laetitia, Lecerf, Frédéric, Acloque, Hervé, Giuffra, Elisabetta, Pitel, Frédérique, Lagarrigue, Sandrine

“…Gene atlases for livestock are steadily improving thanks to new genome assemblies and new expression data improving the gene annotation. However, gene content…”
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