Search Results - "Kinoshita, F"

The international glycan repository GlyTouCan version 3.0 by Fujita, Akihiro, Aoki, Nobuyuki P, Shinmachi, Daisuke, Matsubara, Masaaki, Tsuchiya, Shinichiro, Shiota, Masaaki, Ono, Tamiko, Yamada, Issaku, Aoki-Kinoshita, Kiyoko F

“…Abstract Glycans serve important roles in signaling events and cell-cell communication, and they are recognized by lectins, viruses and bacteria, playing a…”
Get full text

Symbol Nomenclature for Graphical Representations of Glycans by Varki, Ajit, Cummings, Richard D, Aebi, Markus, Packer, Nicole H, Seeberger, Peter H, Esko, Jeffrey D, Stanley, Pamela, Hart, Gerald, Darvill, Alan, Kinoshita, Taroh, Prestegard, James J, Schnaar, Ronald L, Freeze, Hudson H, Marth, Jamey D, Bertozzi, Carolyn R, Etzler, Marilynn E, Frank, Martin, Vliegenthart, Johannes Fg, Lütteke, Thomas, Perez, Serge, Bolton, Evan, Rudd, Pauline, Paulson, James, Kanehisa, Minoru, Toukach, Philip, Aoki-Kinoshita, Kiyoko F, Dell, Anne, Narimatsu, Hisashi, York, William, Taniguchi, Naoyuki, Kornfeld, Stuart

Get full text

Global mapping of glycosylation pathways in human-derived cells by Huang, Yi-Fan, Aoki, Kazuhiro, Akase, Sachiko, Ishihara, Mayumi, Liu, Yi-Shi, Yang, Ganglong, Kizuka, Yasuhiko, Mizumoto, Shuji, Tiemeyer, Michael, Gao, Xiao-Dong, Aoki-Kinoshita, Kiyoko F., Fujita, Morihisa

“…Glycans are one of the fundamental classes of macromolecules and are involved in a broad range of biological phenomena. A large variety of glycan structures…”
Get full text

The GlyCosmos Portal: a unified and comprehensive web resource for the glycosciences by Yamada, Issaku, Shiota, Masaaki, Shinmachi, Daisuke, Ono, Tamiko, Tsuchiya, Shinichiro, Hosoda, Masae, Fujita, Akihiro, Aoki, Nobuyuki P., Watanabe, Yu, Fujita, Noriaki, Angata, Kiyohiko, Kaji, Hiroyuki, Narimatsu, Hisashi, Okuda, Shujiro, Aoki-Kinoshita, Kiyoko F.

Get full text

GlyGen: Computational and Informatics Resources for Glycoscience by York, William S, Mazumder, Raja, Ranzinger, Rene, Edwards, Nathan, Kahsay, Robel, Aoki-Kinoshita, Kiyoko F, Campbell, Matthew P, Cummings, Richard D, Feizi, Ten, Martin, Maria, Natale, Darren A, Packer, Nicolle H, Woods, Robert J, Agarwal, Gaurav, Arpinar, Sena, Bhat, Sanath, Blake, Judith, Castro, Leyla Jael Garcia, Fochtman, Brian, Gildersleeve, Jeffrey, Goldman, Radoslav, Holmes, Xavier, Jain, Vinamra, Kulkarni, Sujeet, Mahadik, Rupali, Mehta, Akul, Mousavi, Reza, Nakarakommula, Sandeep, Navelkar, Rahi, Pattabiraman, Nagarajan, Pierce, Michael J, Ross, Karen, Vasudev, Preethi, Vora, Jeet, Williamson, Tatiana, Zhang, Wenjin

Get full text

Systems glycomics of adult zebrafish identifies organ-specific sialylation and glycosylation patterns by Yamakawa, Nao, Vanbeselaere, Jorick, Chang, Lan-Yi, Yu, Shin-Yi, Ducrocq, Lucie, Harduin-Lepers, Anne, Kurata, Junichi, Aoki-Kinoshita, Kiyoko F., Sato, Chihiro, Khoo, Kay-Hooi, Kitajima, Ken, Guerardel, Yann

“…The emergence of zebrafish Danio rerio as a versatile model organism provides the unique opportunity to monitor the functions of glycosylation throughout…”
Get full text

UniCarbKB: building a knowledge platform for glycoproteomics by Campbell, Matthew P, Peterson, Robyn, Mariethoz, Julien, Gasteiger, Elisabeth, Akune, Yukie, Aoki-Kinoshita, Kiyoko F, Lisacek, Frederique, Packer, Nicolle H

“…The UniCarb KnowledgeBase (UniCarbKB; http://unicarbkb.org) offers public access to a growing, curated database of information on the glycan structures of…”
Get full text

Functional glyco-metagenomics elucidates the role of glycan-related genes in environments by Takihara, Hayato, Miura, Nobuaki, Aoki-Kinoshita, Kiyoko F, Okuda, Shujiro

“…Glycan-related genes play a fundamental role in various processes for energy acquisition and homeostasis maintenance while adapting to the environment in which…”
Get full text

DeepNGlyPred: A Deep Neural Network-Based Approach for Human N-Linked Glycosylation Site Prediction by Pakhrin, Subash C, Aoki-Kinoshita, Kiyoko F, Caragea, Doina, Kc, Dukka B

“…Protein N-linked glycosylation is a post-translational modification that plays an important role in a myriad of biological processes. Computational prediction…”
Get full text

SugarDrawer: A Web-Based Database Search Tool with Editing Glycan Structures by Tsuchiya, Shinichiro, Matsubara, Masaaki, Aoki-Kinoshita, Kiyoko F, Yamada, Issaku

“…In life science fields, database integration is progressing and contributing to collaboration between different research fields, including the glycosciences…”
Get full text

Towards a standardized bioinformatics infrastructure for N- and O-glycomics by Rojas-Macias, Miguel A., Mariethoz, Julien, Andersson, Peter, Jin, Chunsheng, Venkatakrishnan, Vignesh, Aoki, Nobuyuki P., Shinmachi, Daisuke, Ashwood, Christopher, Madunic, Katarina, Zhang, Tao, Miller, Rebecca L., Horlacher, Oliver, Struwe, Weston B., Watanabe, Yu, Okuda, Shujiro, Levander, Fredrik, Kolarich, Daniel, Rudd, Pauline M., Wuhrer, Manfred, Kettner, Carsten, Packer, Nicolle H., Aoki-Kinoshita, Kiyoko F., Lisacek, Frédérique, Karlsson, Niclas G.

“…The mass spectrometry (MS)-based analysis of free polysaccharides and glycans released from proteins, lipids and proteoglycans increasingly relies on databases…”
Get full text

Computational Modeling of O -Linked Glycan Biosynthesis in CHO Cells by Kouka, Thukaa, Akase, Sachiko, Sogabe, Isami, Jin, Chunsheng, Karlsson, Niclas G, Aoki-Kinoshita, Kiyoko F

“…Glycan biosynthesis simulation research has progressed remarkably since 1997, when the first mathematical model for -glycan biosynthesis was proposed. An…”
Get full text

Development and application of an algorithm to compute weighted multiple glycan alignments by Hosoda, Masae, Akune, Yukie, Aoki-Kinoshita, Kiyoko F

“…A glycan consists of monosaccharides linked by glycosidic bonds, has branches and forms complex molecular structures. Databases have been developed to store…”
Get full text

GALAXY ver3: updated web application for glycosylation profiling based on 3D HPLC map by Yagi, Hirokazu, Amagasa, Eijiro, Shiota, Masaaki, Yamada, Issaku, Aoki-Kinoshita, Kiyoko F, Kato, Koichi

“…Abstract High-performance liquid chromatography (HPLC) elution data provide a useful tool for quantitative glycosylation profiling, discriminating isomeric…”
Get full text

Glycome informatics: using systems biology to gain mechanistic insights into glycan biosynthesis by Aoki-Kinoshita, Kiyoko F

“…[Display omitted] Glycobiology entails the study of glycans, or carbohydrate sugar chains. Much research has been made in understanding individual glycogenes…”
Get full text

An N-glycome tissue atlas of 15 human normal and cancer tissue types determined by MALDI-imaging mass spectrometry by Wallace, Elizabeth N., West, Connor A., McDowell, Colin T., Lu, Xiaowei, Bruner, Evelyn, Mehta, Anand S., Aoki-Kinoshita, Kiyoko F., Angel, Peggi M., Drake, Richard R.

“…N- glycosylation is an abundant post-translational modification of most cell-surface proteins. N- glycans play a crucial role in cellular functions like…”
Get full text

Implementation of GlycanBuilder to draw a wide variety of ambiguous glycans by Tsuchiya, Shinichiro, Aoki, Nobuyuki P., Shinmachi, Daisuke, Matsubara, Masaaki, Yamada, Issaku, Aoki-Kinoshita, Kiyoko F., Narimatsu, Hisashi

“…GlyTouCan version 1.0 was released in 2015 as the international glycan structure repository, and a new sequence format called WURCS (Web3 Unique Representation…”
Get full text

The GlycomeAtlas tool for visualizing and querying glycome data by KONISHI, Yoshitsugu, AOKI-KINOSHITA, Kiyoko F

“…The development of glycomics technologies in recent years has produced a sufficient amount of data to begin analyzing the glycan structures present in various…”
Get full text

MCAW-DB: A glycan profile database capturing the ambiguity of glycan recognition patterns by Hosoda, Masae, Takahashi, Yushi, Shiota, Masaaki, Shinmachi, Daisuke, Inomoto, Renji, Higashimoto, Shinichi, Aoki-Kinoshita, Kiyoko F.

“…Glycan-binding protein (GBP) interaction experiments, such as glycan microarrays, are often used to understand glycan recognition patterns. However, oftentimes…”
Get full text

The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data by Liu, Yan, McBride, Ryan, Stoll, Mark, Palma, Angelina S, Silva, Lisete, Agravat, Sanjay, Aoki-Kinoshita, Kiyoko F, Campbell, Matthew P, Costello, Catherine E, Dell, Anne, Haslam, Stuart M, Karlsson, Niclas G, Khoo, Kay-Hooi, Kolarich, Daniel, Novotny, Milos V, Packer, Nicolle H, Ranzinger, Rene, Rapp, Erdmann, Rudd, Pauline M, Struwe, Weston B, Tiemeyer, Michael, Wells, Lance, York, William S, Zaia, Joseph, Kettner, Carsten, Paulson, James C, Feizi, Ten, Smith, David F

“…MIRAGE (Minimum Information Required for A Glycomics Experiment) is an initiative that was created by experts in the fields of glycobiology, glycoanalytics and…”
Get full text