Search Results - "Kibler, D."

De novo design of protein logic gates by Chen, Zibo, Kibler, Ryan D, Hunt, Andrew, Busch, Florian, Pearl, Jocelynn, Jia, Mengxuan, VanAernum, Zachary L, Wicky, Basile I M, Dods, Galen, Liao, Hanna, Wilken, Matthew S, Ciarlo, Christie, Green, Shon, El-Samad, Hana, Stamatoyannopoulos, John, Wysocki, Vicki H, Jewett, Michael C, Boyken, Scott E, Baker, David

“…The design of modular protein logic for regulating protein function at the posttranscriptional level is a challenge for synthetic biology. Here, we describe…”
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De novo design of knotted tandem repeat proteins by Doyle, Lindsey A., Takushi, Brittany, Kibler, Ryan D., Milles, Lukas F., Orozco, Carolina T., Jones, Jonathan D., Jackson, Sophie E., Stoddard, Barry L., Bradley, Philip

“…De novo protein design methods can create proteins with folds not yet seen in nature. These methods largely focus on optimizing the compatibility between the…”
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Novel Role of Macrophage Migration Inhibitory Factor in Upstream Control of the Unfolded Protein Response After Ethanol Feeding in Mice by Poulsen, Kyle Lauren, McMullen, Megan R., Huang, Emily, Kibler, Christopher D., Sheehan, Megan M., Leng, Lin, Bucala, Richard, Nagy, Laura E.

“…Background Macrophage migration inhibitory factor (MIF), a pluripotent immune regulator, is an emerging mediator in alcohol‐related liver disease (ALD). MIF is…”
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Relations between hydrology and velocity of a continuously moving landslide--evidence of pore-pressure feedback regulating landslide motion by Schulz, William H, McKenna, Jonathan P, Kibler, John D, Biavati, Giulia

“…We measured displacement, pore-water pressure, and climatic conditions for 3 years at the continuously moving Slumgullion landslide in Colorado, USA. The…”
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Genetically Encoded XTEN‐based Hydrogels with Tunable Viscoelasticity and Biodegradability for Injectable Cell Therapies by Bennett, Jennifer I., Boit, Mary O'Kelly, Gregorio, Nicole E., Zhang, Fan, Kibler, Ryan D., Hoye, Jack W., Prado, Olivia, Rapp, Peter B., Murry, Charles E., Stevens, Kelly R., DeForest, Cole A.

“…While direct cell transplantation holds great promise in treating many debilitating diseases, poor cell survival and engraftment following injection have…”
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Role of MIF in coordinated expression of hepatic chemokines in patients with alcohol-associated hepatitis by Poulsen, Kyle L, Fan, Xiude, Kibler, Christopher D, Huang, Emily, Wu, Xiaoqin, McMullen, Megan R, Leng, Lin, Bucala, Richard, Ventura-Cots, Meritxell, Argemi, Josepmaria, Bataller, Ramon, Nagy, Laura E

“…The chemokine system of ligands and receptors is implicated in the progression of alcohol-associated hepatitis (AH). Finding upstream regulators could lead to…”
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Hallucinating symmetric protein assemblies by Wicky, B I M, Milles, L F, Courbet, A, Ragotte, R J, Dauparas, J, Kinfu, E, Tipps, S, Kibler, R D, Baek, M, DiMaio, F, Li, X, Carter, L, Kang, A, Nguyen, H, Bera, A K, Baker, D

“…Deep learning generative approaches provide an opportunity to broadly explore protein structure space beyond the sequences and structures of natural proteins…”
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Seasonal movement of the Slumgullion landslide determined from Global Positioning System surveys and field instrumentation, July 1998–March 2002 by Coe, J.A, Ellis, W.L, Godt, J.W, Savage, W.Z, Savage, J.E, Michael, J.A, Kibler, J.D, Powers, P.S, Lidke, D.J, Debray, S

“…Measurements of landslide movement made by global positioning system surveys and extensometers over a 3.5-year period show that the Slumgullion landslide in…”
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Novel biphasic gels can mimic and replace animal fat in fully-cooked coarse-ground sausage by Kibler, Nicole D., Acevedo, Nuria C., Cho, Karin, Zuber-McQuillen, Elizabeth A., Carvajal, Yureni B., Tarté, Rodrigo

“…Four biphasic gels (BPG) were developed and tested as pork fat replacers in coarse-ground fully-cooked sausages. An oleogel (OG) phase (92.5% high-oleic…”
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Precisely patterned nanofibres made from extendable protein multiplexes by Bethel, Neville P., Borst, Andrew J., Parmeggiani, Fabio, Bick, Matthew J., Brunette, TJ, Nguyen, Hannah, Kang, Alex, Bera, Asim K., Carter, Lauren, Miranda, Marcos C., Kibler, Ryan D., Lamb, Mila, Li, Xinting, Sankaran, Banumathi, Baker, David

“…Molecular systems with coincident cyclic and superhelical symmetry axes have considerable advantages for materials design as they can be readily lengthened or…”
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Blueprinting extendable nanomaterials with standardized protein blocks by Huddy, Timothy F., Hsia, Yang, Kibler, Ryan D., Xu, Jinwei, Bethel, Neville, Nagarajan, Deepesh, Redler, Rachel, Leung, Philip J. Y., Weidle, Connor, Courbet, Alexis, Yang, Erin C., Bera, Asim K., Coudray, Nicolas, Calise, S. John, Davila-Hernandez, Fatima A., Han, Hannah L., Carr, Kenneth D., Li, Zhe, McHugh, Ryan, Reggiano, Gabriella, Kang, Alex, Sankaran, Banumathi, Dickinson, Miles S., Coventry, Brian, Brunette, T. J., Liu, Yulai, Dauparas, Justas, Borst, Andrew J., Ekiert, Damian, Kollman, Justin M., Bhabha, Gira, Baker, David

“…A wooden house frame consists of many different lumber pieces, but because of the regularity of these building blocks, the structure can be designed using…”
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A concise review of lobster utilization by worldwide human populations from prehistory to the modern era by Spanier, Ehud, Lavalli, Kari L, Goldstein, Jason S, Groeneveld, Johan C, Jordaan, Gareth L, Jones, Clive M, Phillips, Bruce F, Bianchini, Marco L, Kibler, Rebecca D, Diaz, David, Mallol, Sandra, Goni, Raquel, van Der Meeren, Gro I, Agnalt, Ann-Lisbeth, Behringer, Donald C, Keegan, William F, Jeffs, Andrew

“…Abstract Lobsters are important resources throughout the world's oceans, providing food security, employment, and a trading commodity. Whereas marine…”
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Site-specific Substitutions Eliminate Aggregation Properties of Hemopressin by Song, Benben, Kibler, Patrick D., Endsley, Aaron N., Nayak, Surendra K., Galande, Amit K., Jambunathan, Kalyani

“…Hemopressin is a naturally occurring and therapeutically relevant peptide with applications in hypertension, pain, addiction, and obesity. We had previously…”
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CONSTRUCTING A PROBLEM SOLVING ENVIRONMENT TOOL FOR HYDROLOGIC ASSESSMENT OF LAND USE CHANGE by Lohani, Vinod, Kibler, David F., Chanat, Jeffery

“…Using the Back Creek watershed in the upper Roanoke River basin, VA, as the study area, a graphically based, user-friendly, web-enabled Problem Solving…”
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Hydrological and Fiscal Impacts of Residential Development: Virginia Case Study by Bosch, Darrell J, Lohani, Vinod K, Dymond, Randy L, Kibler, David F, Stephenson, Kurt

“…This study examined hydrological and fiscal effects of residential growth patterns in Virginia. Eleven scenarios that consider a fixed increase in population…”
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From landscapes to waterscapes: A PSE for landuse change analysis by Rubin, E.J., Shaffer, C.A., Ramakrishnan, N., Watson, L.T., Dymond, R., Kibler, D., Dietz, R., Chanat, J., Lohani, V., Bosch, D., Speir, C.

“…We describe the design and implementation of L2W - a Problem Solving Environment (PSE) for landuse change analysis. L2W organizes and unifies the diverse…”
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Sizing Storm-Water Detention Basins for Pollutant Removal by Loganathan, G. V, Watkins, E. W, Kibler, D. F

“…A statistical formulation for estimating the average time of detention within a pond for a captured runoff volume is presented. For a conservative estimator,…”
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Integrated Computing Environments for Watershed Management by Watson, Layne T, Lohani, Vinod K, Kibler, David F, Dymond, Randel L, Ramakrishnan, Naren, Shaffer, Clifford A

“…This paper describes a new computing paradigm known as a problem solving environment (PSE), explores the role this new paradigm might play in watershed…”
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Using hexamers to predict cis-regulatory motifs in Drosophila by Chan, Bob Y, Kibler, Dennis

“…Cis-regulatory modules (CRMs) are short stretches of DNA that help regulate gene expression in higher eukaryotes. They have been found up to 1 megabase away…”
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Necessary and sufficient conditions for the existence of the modular Fourier transform: Comments on "Number theoretic transforms to implement fast digital convolution" by Kibler, D., Agarwal, R.C.

“…A correct proof of Theorem 2 from the paper "Number Theoretic Transforms to Implement Fast Digital Convolutions," giving necessary and sufficient conditions…”
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