Search Results - "Kemp, Melissa L."
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Integration of machine learning and genome-scale metabolic modeling identifies multi-omics biomarkers for radiation resistance
Published in Nature communications (11-05-2021)“…Resistance to ionizing radiation, a first-line therapy for many cancers, is a major clinical challenge. Personalized prediction of tumor radiosensitivity is…”
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Agent-based modeling of morphogenetic systems: Advantages and challenges
Published in PLoS computational biology (01-03-2019)“…The complexity of morphogenesis poses a fundamental challenge to understanding the mechanisms governing the formation of biological patterns and structures…”
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Dynamic intercellular transport modulates the spatial patterning of differentiation during early neural commitment
Published in Nature communications (05-10-2018)“…The initiation of heterogeneity within a population of phenotypically identical progenitors is a critical event for the onset of morphogenesis and…”
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A model of redox kinetics implicates the thiol proteome in cellular hydrogen peroxide responses
Published in Antioxidants & redox signaling (15-09-2010)“…Hydrogen peroxide is appreciated as a cellular signaling molecule with second-messenger properties, yet the mechanisms by which the cell protects against…”
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iCLOTS: open-source, artificial intelligence-enabled software for analyses of blood cells in microfluidic and microscopy-based assays
Published in Nature communications (18-08-2023)“…While microscopy-based cellular assays, including microfluidics, have significantly advanced over the last several decades, there has not been concurrent…”
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Oscillatory IL-2 stimulus reveals pertinent signaling timescales of T cell responsiveness
Published in PloS one (18-09-2018)“…Cell response to extracellular ligand is affected not only by ligand availability, but also by pre-existing cell-to-cell variability that enables a range of…”
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Investigation of MSC potency metrics via integration of imaging modalities with lipidomic characterization
Published in Cell reports (Cambridge) (27-08-2024)“…Mesenchymal stem/stromal cell (MSC) therapies have had limited success so far in clinical trials due in part to heterogeneity in immune-responsive phenotypes…”
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An automated programmable platform enabling multiplex dynamic stimuli delivery and cellular response monitoring for high-throughput suspension single-cell signaling studies
Published in Lab on a chip (01-01-2015)“…Cell signaling events are orchestrated by dynamic external biochemical cues. By rapidly perturbing cells with dynamic inputs and examining the output from…”
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Author Correction: Dynamic intercellular transport modulates the spatial patterning of differentiation during early neural commitment
Published in Nature communications (16-11-2018)“…In the original version of this Article, an incorrect DOI number was provided in the Code Availability statement regarding the deposition of the computational…”
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Perspective: The promise of multi-cellular engineered living systems
Published in APL bioengineering (01-12-2018)“…Recent technological breakthroughs in our ability to derive and differentiate induced pluripotent stem cells, organoid biology, organ-on-chip assays, and 3-D…”
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MTHFD2 Blockade Enhances the Efficacy of β-Lapachone Chemotherapy With Ionizing Radiation in Head and Neck Squamous Cell Cancer
Published in Frontiers in oncology (11-11-2020)“…Head and Neck Squamous Cell Cancer (HNSCC) presents with multiple treatment challenges limiting overall survival rates and affecting patients' quality of life…”
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Trans-spliced Cas9 allows cleavage of HBB and CCR5 genes in human cells using compact expression cassettes
Published in Scientific reports (01-07-2015)“…CRISPR/Cas9 systems have been used in a wide variety of biological studies; however, the large size of CRISPR/Cas9 presents challenges in packaging it within…”
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Spatial pattern dynamics of 3D stem cell loss of pluripotency via rules-based computational modeling
Published in PLoS computational biology (01-03-2013)“…Pluripotent embryonic stem cells (ESCs) have the unique ability to differentiate into cells from all germ lineages, making them a potentially robust cell…”
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Identification of Distinct, Quantitative Pattern Classes from Emergent Tissue-Scale hiPSC Bioelectric Properties
Published in Cells (Basel, Switzerland) (02-07-2024)“…Bioelectric signals possess the ability to robustly control and manipulate patterning during embryogenesis and tissue-level regeneration. Endogenous local and…”
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Redox integration of signaling and metabolism in a head and neck cancer model of radiation resistance using COSMRO
Published in Frontiers in oncology (04-01-2023)“…Redox metabolism is increasingly investigated in cancer as driving regulator of tumor progression, response to therapies and long-term patients’ quality of…”
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Single-Cell Kinetic Modeling of β-Lapachone Metabolism in Head and Neck Squamous Cell Carcinoma
Published in Antioxidants (01-03-2023)“…Head and neck squamous cell carcinoma (HNSCC) cells are highly heterogeneous in their metabolism and typically experience elevated reactive oxygen species…”
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Dynamic Redox Regulation of IL-4 Signaling
Published in PLoS computational biology (01-11-2015)“…Quantifying the magnitude and dynamics of protein oxidation during cell signaling is technically challenging. Computational modeling provides tractable,…”
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Spatially-resolved intracellular sensing of hydrogen peroxide in living cells
Published in Scientific reports (20-11-2015)“…Understanding intracellular redox chemistry requires new tools for the site-specific visualization of intracellular oxidation. We have developed a…”
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A switching mechanism in doxorubicin bioactivation can be exploited to control doxorubicin toxicity
Published in PLoS computational biology (01-09-2011)“…Although doxorubicin toxicity in cancer cells is multifactorial, the enzymatic bioactivation of the drug can significantly contribute to its cytotoxicity…”
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Gene expression signatures of extracellular matrix and growth factors during embryonic stem cell differentiation
Published in PloS one (15-10-2012)“…Pluripotent stem cells are uniquely capable of differentiating into somatic cell derivatives of all three germ lineages, therefore holding tremendous promise…”
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