Search Results - "Kelly, Benjamin"

Dry, drier, driest: Differentiating flow patterns across a gradient of intermittency by Kelly, Benjamin T., Bruckerhoff, Lindsey A.

“…Intermittent streams exhibit regular patterns of drying and are widespread, but the patterns of drying among streams within geographic proximity are not fully…”
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Churchill: an ultra-fast, deterministic, highly scalable and balanced parallelization strategy for the discovery of human genetic variation in clinical and population-scale genomics by Kelly, Benjamin J, Fitch, James R, Hu, Yangqiu, Corsmeier, Donald J, Zhong, Huachun, Wetzel, Amy N, Nordquist, Russell D, Newsom, David L, White, Peter

“…While advances in genome sequencing technology make population-scale genomics a possibility, current approaches for analysis of these data rely upon…”
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Salivary gland carcinosarcoma ex pleomorphic adenoma: a case report with molecular characterization by Javaid, Sehrish, Wang, Daren, Kelly, Benjamin J, Kalim, Sonya, Yanich, Jason, Kalmar, John R., Mallery, Susan R.

“…True malignant mixed tumors, also known as salivary gland carcinosarcoma (SCS), are uncommon yet highly aggressive lesions associated with a poor prognosis…”
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Public discourse and wilful incommensurability: a case for attentive free speech by Smith, Todd, Kelly, Benjamin W

“…Many thinkers lament the decline of liberal democracy. Some argue that, to rejuvenate it, we must think big. Thinking big involves generating new ideas about…”
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Anti-human CD117 antibody-mediated bone marrow niche clearance in nonhuman primates and humanized NSG mice by Kwon, Hye-Sook, Logan, Aaron C., Chhabra, Akanksha, Pang, Wendy W., Czechowicz, Agnieszka, Tate, Keri, Le, Alan, Poyser, Jessica, Hollis, Roger, Kelly, Benjamin V., Kohn, Donald B., Weissman, Irving L., Prohaska, Susan S., Shizuru, Judith A.

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A cross-sectional investigation of parenting style and friendship as mediators of the relation between social class and mental health in a university community by Rubin, Mark, Kelly, Benjamin M

“…This study tested a novel explanation for the positive relation between social class and mental health among university students. Students with a higher social…”
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Full-length isoform concatenation sequencing to resolve cancer transcriptome complexity by Wijeratne, Saranga, Gonzalez, Maria E Hernandez, Roach, Kelli, Miller, Katherine E, Schieffer, Kathleen M, Fitch, James R, Leonard, Jeffrey, White, Peter, Kelly, Benjamin J, Cottrell, Catherine E, Mardis, Elaine R, Wilson, Richard K, Miller, Anthony R

“…Cancers exhibit complex transcriptomes with aberrant splicing that induces isoform-level differential expression compared to non-diseased tissues…”
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The association of smoking with different eating and dietary behaviours: A cross‐sectional analysis of 80 296 United Kingdom adults by Alruwaili, Arwa, King, James A., Deighton, Kevin, Kelly, Benjamin M., Liao, Zhining, Innes, Aidan, Henson, Joseph, Yates, Thomas, Johnson, William, Thivel, David, Metz, Lore, Thackray, Alice E., Tolfrey, Keith, Stensel, David J., Willis, Scott A.

“…Background and aims Smokers typically have a lower body mass index (BMI) than non‐smokers, while smoking cessation is associated with weight gain. In…”
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ChIP-Seq and RNA-Seq reveal an AmrZ-mediated mechanism for cyclic di-GMP synthesis and biofilm development by Pseudomonas aeruginosa by Jones, Christopher J, Newsom, David, Kelly, Benjamin, Irie, Yasuhiko, Jennings, Laura K, Xu, Binjie, Limoli, Dominique H, Harrison, Joe J, Parsek, Matthew R, White, Peter, Wozniak, Daniel J

“…The transcription factor AmrZ regulates genes important for P. aeruginosa virulence, including type IV pili, extracellular polysaccharides, and the flagellum;…”
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Lymphatic Abnormalities on Magnetic Resonance Imaging in Single-Ventricle Congenital Heart Defects Before Glenn Operation by Kristensen, Rasmus, Kelly, Benjamin, Kim, Emily, Dori, Yoav, Hjortdal, Vibeke E

“…Background In the palliative pathway of single-ventricle physiology, lymphatic abnormalities on T2-weighted magnetic resonance imaging have been shown after…”
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A Practical and Time-Efficient High-Intensity Interval Training Program Modifies Cardio-Metabolic Risk Factors in Adults with Risk Factors for Type II Diabetes by Phillips, Bethan E, Kelly, Benjamin M, Lilja, Mats, Ponce-González, Jesús Gustavo, Brogan, Robert J, Morris, David L, Gustafsson, Thomas, Kraus, William E, Atherton, Philip J, Vollaard, Niels B J, Rooyackers, Olav, Timmons, James A

“…Regular physical activity (PA) can reduce the risk of developing type 2 diabetes, but adherence to time-orientated (150 min week or more) PA guidelines is very…”
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Evaluating differences in the clinical impact of a free online weight loss programme, a resource-intensive commercial weight loss programme and an active control condition: a parallel randomised controlled trial by Innes, Aidan Q, Thomson, Greig, Cotter, Mary, King, James A, Vollaard, Niels B J, Kelly, Benjamin M

“…Finding effective intervention strategies to combat rising obesity levels could significantly reduce the burden that obesity and associated non-communicable…”
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Improved clinical outcomes in response to a 12-week blended digital and community-based long-COVID-19 rehabilitation programme by Smith, Jemma L, Deighton, Kevin, Innes, Aidan Q, Holl, Marc, Mould, Laura, Liao, Zhining, Doherty, Patrick, Whyte, Greg, King, James A, Deniszczyc, Davina, Kelly, Benjamin M

“…Two million people in the UK are experiencing long COVID (LC), which necessitates effective and scalable interventions to manage this condition. This study…”
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Exome sequencing in multiplex families with left-sided cardiac defects has high yield for disease gene discovery by Gordon, David M., Cunningham, David, Zender, Gloria, Lawrence, Patrick J., Penaloza, Jacqueline S., Lin, Hui, Fitzgerald-Butt, Sara M., Myers, Katherine, Duong, Tiffany, Corsmeier, Donald J., Gaither, Jeffrey B., Kuck, Harkness C., Wijeratne, Saranga, Moreland, Blythe, Kelly, Benjamin J., Garg, Vidu, White, Peter, McBride, Kim L.

“…Congenital heart disease (CHD) is a common group of birth defects with a strong genetic contribution to their etiology, but historically the diagnostic yield…”
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YAP1-FAM118B Fusion Defines a Rare Subset of Childhood and Young Adulthood Meningiomas by Schieffer, Kathleen M., Agarwal, Vibhuti, LaHaye, Stephanie, Miller, Katherine E., Koboldt, Daniel C., Lichtenberg, Tara, Leraas, Kristen, Brennan, Patrick, Kelly, Benjamin J., Crist, Erin, Rusin, Jerome, Finlay, Jonathan L., Osorio, Diana S., Sribnick, Eric A., Leonard, Jeffrey R., Feldman, Alexander, Orr, Brent A., Serrano, Jonathan, Vasudevaraja, Varshini, Snuderl, Matija, White, Peter, Magrini, Vincent, Wilson, Richard K., Mardis, Elaine R., Boué, Daniel R., Cottrell, Catherine E.

“…Meningiomas are a central nervous system tumor primarily afflicting adults, with <1% of cases diagnosed during childhood or adolescence. Somatic variation in…”
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HrrF is the Fur-regulated small RNA in nontypeable Haemophilus influenzae by Santana, Estevan A, Harrison, Alistair, Zhang, Xinjun, Baker, Beth D, Kelly, Benjamin J, White, Peter, Liu, Yunlong, Munson, Jr, Robert S

“…Nontypeable Haemophilus influenzae (NTHi) are Gram-negative commensal bacteria that reside in the nasopharynx. NTHi can also cause multiple upper and lower…”
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Agnostic Interactionism and Sensitizing Concepts in the 21st Century: Developing Shaffirian Theory-Work in Ethnographic Research by Kelly, Benjamin, Adorjan, Michael

“…In this paper, we reflect upon our experiences taking a graduate qualitative methodol¬ogy course with Dr. William (Billy) Shaffir. We highlight Billy’s…”
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Gastroblastoma with a novel EWSR1‐CTBP1 fusion presenting in adolescence by Koo, Selene C., LaHaye, Stephanie, Kovari, Bence P., Schieffer, Kathleen M., Ranalli, Mark A., Aldrink, Jennifer H., Michalsky, Marc P., Colace, Susan, Miller, Katherine E., Bedrosian, Tracy A., Leraas, Kristen M., Voytovich, Kyle, Wheeler, Gregory, Brennan, Patrick, Fitch, James, Kelly, Benjamin J., McGrath, Sean D., Miller, Anthony R., White, Peter, Magrini, Vincent, Wilson, Richard K., Mardis, Elaine R., Lauwers, Gregory Y., Baker, Peter B., Cottrell, Catherine E.

“…Gastroblastomas are rare tumors with a biphasic epithelioid/spindle cell morphology that typically present in early adulthood and have recurrent MALAT1‐GLI1…”
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Pacific Biosciences Fusion and Long Isoform Pipeline for Cancer Transcriptome–Based Resolution of Isoform Complexity by Miller, Anthony R., Wijeratne, Saranga, McGrath, Sean D., Schieffer, Kathleen M., Miller, Katherine E., Lee, Kristy, Mathew, Mariam, LaHaye, Stephanie, Fitch, James R., Kelly, Benjamin J., White, Peter, Mardis, Elaine R., Wilson, Richard K., Cottrell, Catherine E., Magrini, Vincent

“…Genomic profiling using short-read sequencing has utility in detecting disease-associated variation in both DNA and RNA. However, given the frequent occurrence…”
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Evidence of pioneer factor activity of an oncogenic fusion transcription factor by Sunkel, Benjamin D., Wang, Meng, LaHaye, Stephanie, Kelly, Benjamin J., Fitch, James R., Barr, Frederic G., White, Peter, Stanton, Benjamin Z.

“…Recent characterizations of pioneer transcription factors provide insights into their structures and patterns of chromatin recognition associated with their…”
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