Search Results - "Keith A Crandall"

Earth BioGenome Project: Sequencing life for the future of life by Lewin, Harris A., Robinson, Gene E., Kress, W. John, Baker, William J., Coddington, Jonathan, Crandall, Keith A., Durbin, Richard, Edwards, Scott V., Forest, Félix, Gilbert, M. Thomas P., Goldstein, Melissa M., Grigoriev, Igor V., Hackett, Kevin J., Haussler, David, Jarvis, Erich D., Johnson, Warren E., Patrinos, Aristides, Richards, Stephen, Castilla-Rubio, Juan Carlos, van Sluys, Marie-Anne, Soltis, Pamela S., Xu, Xun, Yang, Huanming, Zhang, Guojie

“…Increasing our understanding of Earth’s biodiversity and responsibly stewarding its resources are among the most crucial scientific and social challenges of…”
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A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans by Wolfe, Joanna M, Breinholt, Jesse W, Crandall, Keith A, Lemmon, Alan R, Lemmon, Emily Moriarty, Timm, Laura E, Siddall, Mark E, Bracken-Grissom, Heather D

“…Comprising over 15 000 living species, decapods (crabs, shrimp and lobsters) are the most instantly recognizable crustaceans, representing a considerable…”
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Genome-wide analysis of SARS-CoV-2 virus strains circulating worldwide implicates heterogeneity by Islam, M. Rafiul, Hoque, M. Nazmul, Rahman, M. Shaminur, Alam, A. S. M. Rubayet Ul, Akther, Masuda, Puspo, J. Akter, Akter, Salma, Sultana, Munawar, Crandall, Keith A., Hossain, M. Anwar

“…Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), a novel evolutionary divergent RNA virus, is responsible for the present devastating COVID-19…”
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Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified by Song, Hojun, Buhay, Jennifer E, Whiting, Michael F, Crandall, Keith A

“…Nuclear mitochondrial pseudogenes (numts) are nonfunctional copies of mtDNA in the nucleus that have been found in major clades of eukaryotic organisms. They…”
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Gut microbiome differences between wild and captive black rhinoceros – implications for rhino health by Gibson, Keylie M., Nguyen, Bryan N., Neumann, Laura M., Miller, Michele, Buss, Peter, Daniels, Savel, Ahn, Michelle J., Crandall, Keith A., Pukazhenthi, Budhan

“…A number of recent studies have shown the importance of the mammalian gut microbiome in host health. In the context of endangered species, a few studies have…”
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Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data by Odom, Aubrey R., Faits, Tyler, Castro-Nallar, Eduardo, Crandall, Keith A., Johnson, W. Evan

“…Most experiments studying bacterial microbiomes rely on the PCR amplification of all or part of the gene for the 16S rRNA subunit, which serves as a biomarker…”
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Kisspeptin/GPR54 System: What Do We Know About Its Role in Human Reproduction? by Trevisan, Camila M., Montagna, Erik, de Oliveira, Renato, Christofolini, Denise M., Barbosa, Caio P., Crandall, Keith A., Bianco, Bianca 

“…Kisspeptin is involved in the control of human reproduction bridging the gap between the sex steroid levels and feedback mechanisms that control the…”
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Metabolite, protein, and tissue dysfunction associated with COVID-19 disease severity by Rahnavard, Ali, Mann, Brendan, Giri, Abhigya, Chatterjee, Ranojoy, Crandall, Keith A.

“…Proteins are direct products of the genome and metabolites are functional products of interactions between the host and other factors such as environment,…”
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Synthesis of phylogeny and taxonomy into a comprehensive tree of life by Hinchliff, Cody E., Smith, Stephen A., Allman, James F., Burleigh, J. Gordon, Chaudhary, Ruchi, Coghill, Lyndon M., Crandall, Keith A., Deng, Jiabin, Drew, Bryan T., Gazis, Romina, Gude, Karl, Hibbett, David S., Katz, Laura A., Laughinghouse, H. Dail, McTavish, Emily Jane, Midford, Peter E., Owen, Christopher L., Ree, Richard H., Rees, Jonathan A., Soltis, Douglas E., Williams, Tiffani, Cranston, Karen A.

“…Reconstructing the phylogenetic relationships that unite all lineages (the tree of life) is a grand challenge. The paucity of homologous character data across…”
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Baseline human gut microbiota profile in healthy people and standard reporting template by King, Charles H, Desai, Hiral, Sylvetsky, Allison C, LoTempio, Jonathan, Ayanyan, Shant, Carrie, Jill, Crandall, Keith A, Fochtman, Brian C, Gasparyan, Lusine, Gulzar, Naila, Howell, Paul, Issa, Najy, Krampis, Konstantinos, Mishra, Lopa, Morizono, Hiroki, Pisegna, Joseph R, Rao, Shuyun, Ren, Yao, Simonyan, Vahan, Smith, Krista, VedBrat, Sharanjit, Yao, Michael D, Mazumder, Raja

“…A comprehensive knowledge of the types and ratios of microbes that inhabit the healthy human gut is necessary before any kind of pre-clinical or clinical study…”
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Earthworms drastically change fungal and bacterial communities during vermicomposting of sewage sludge by Domínguez, Jorge, Aira, Manuel, Crandall, Keith A., Pérez-Losada, Marcos

“…Wastewater treatment plants produce hundreds of million tons of sewage sludge every year all over the world. Vermicomposting is well established worldwide and…”
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Pathogen typing in the genomics era: MLST and the future of molecular epidemiology by Pérez-Losada, Marcos, Cabezas, Patricia, Castro-Nallar, Eduardo, Crandall, Keith A.

“…► We review the molecular methods, analytical approaches and contributions of MLST. ► We compare MLST to whole genome sequence typing approaches (WGST). ► We…”
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Deep Ancestral Introgression Shapes Evolutionary History of Dragonflies and Damselflies by Suvorov, Anton, Scornavacca, Celine, Fujimoto, M Stanley, Bodily, Paul, Clement, Mark, Crandall, Keith A, Whiting, Michael F, Schrider, Daniel R, Bybee, Seth M

“…Abstract Introgression is an important biological process affecting at least 10% of the extant species in the animal kingdom. Introgression significantly…”
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Spatial diversity of the skin bacteriome by Pérez-Losada, Marcos, Crandall, Keith A.

“…The bacterial communities of the human skin impact its physiology and homeostasis, hence elucidating the composition and structure of the healthy skin…”
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Global diversity of crayfish (Astacidae, Cambaridae, and Parastacidae--Decapoda) in freshwater by Crandall, Keith A, Buhay, Jennifer E

“…The freshwater crayfishes are distributed across all but the Indian and Antarctic continents with centers of diversity in the southeastern Appalachian…”
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A new molecular phylogeny-based taxonomy of parasitic barnacles (Crustacea: Cirripedia: Rhizocephala) by Høeg, Jens T, Noever, Christoph, Rees, David A, Crandall, Keith A, Glenner, Henrik

“…Abstract Rhizocephalans are abundant members of marine ecosystems and are important regulators of crustacean host populations. Morphological and ecological…”
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Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression by Bendall, Matthew L, de Mulder, Miguel, Iñiguez, Luis Pedro, Lecanda-Sánchez, Aarón, Pérez-Losada, Marcos, Ostrowski, Mario A, Jones, R Brad, Mulder, Lubbertus C F, Reyes-Terán, Gustavo, Crandall, Keith A, Ormsby, Christopher E, Nixon, Douglas F

“…Characterization of Human Endogenous Retrovirus (HERV) expression within the transcriptomic landscape using RNA-seq is complicated by uncertainty in fragment…”
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Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape by Nguyen, Bryan N., Shen, Elaine W., Seemann, Janina, Correa, Adrienne M. S., O’Donnell, James L., Altieri, Andrew H., Knowlton, Nancy, Crandall, Keith A., Egan, Scott P., McMillan, W. Owen, Leray, Matthieu

“…Accurate, rapid, and comprehensive biodiversity assessments are critical for investigating ecological processes and supporting conservation efforts…”
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Drug Resistance Prediction Using Deep Learning Techniques on HIV-1 Sequence Data by Steiner, Margaret C, Gibson, Keylie M, Crandall, Keith A

“…The fast replication rate and lack of repair mechanisms of human immunodeficiency virus (HIV) contribute to its high mutation frequency, with some mutations…”
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Nasopharyngeal Microbiome Diversity Changes over Time in Children with Asthma by Pérez-Losada, Marcos, Alamri, Lamia, Crandall, Keith A, Freishtat, Robert J

“…The nasopharynx is a reservoir for pathogens associated with respiratory illnesses such as asthma. Next-generation sequencing (NGS) has been used to…”
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