Search Results - "Keersmaecker, Sigrid C.J. De"

Isolation of Drug-Resistant Gallibacterium anatis from Calves with Unresponsive Bronchopneumonia, Belgium by Van Driessche, Laura, Vanneste, Kevin, Bogaerts, Bert, De Keersmaecker, Sigrid C J, Roosens, Nancy H, Haesebrouck, Freddy, De Cremer, Lieze, Deprez, Piet, Pardon, Bart, Boyen, Filip

“…Gallibacterium anatis is an opportunistic pathogen, previously associated with deaths in poultry, domestic birds, and occasionally humans. We obtained G…”
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community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2 by Thiele, Ines, Hyduke, Daniel R, Steeb, Benjamin, Fankam, Guy, Allen, Douglas K, Bazzani, Susanna, Charusanti, Pep, Chen, Feng-Chi, Fleming, Ronan M.T, Hsiung, Chao A, Keersmaecker, Sigrid C.J. de, Liao, Yu-Chieh, Marchal, Kathleen, Mo, Monica L, Özdemir, Emre, Raghunathan, Anu

“…Background: Metabolic reconstructions (MRs) are common denominators in systems biology and represent biochemical, genetic, and genomic (BiGG) knowledge-bases…”
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Salmonella biofilms: An overview on occurrence, structure, regulation and eradication by Steenackers, Hans, Hermans, Kim, Vanderleyden, Jos, De Keersmaecker, Sigrid C.J.

“…The ability of Salmonella to form complex surface-associated communities, called biofilms, contributes to its resistance and persistence in both host and…”
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Host interactions of probiotic bacterial surface molecules: comparison with commensals and pathogens by Vanderleyden, Jos, Lebeer, Sarah, De Keersmaecker, Sigrid C. J

“…Key Points The interaction of probiotic surface molecules with host pattern recognition receptors (PRRs) and associated co-receptors plays a key part in the…”
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Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus by Berbers, Bas, Saltykova, Assia, Garcia-Graells, Cristina, Philipp, Patrick, Arella, Fabrice, Marchal, Kathleen, Winand, Raf, Vanneste, Kevin, Roosens, Nancy H. C., De Keersmaecker, Sigrid C. J.

“…Antimicrobial resistance (AMR) is a major public health threat. Plasmids are able to transfer AMR genes among bacterial isolates. Whole genome sequencing (WGS)…”
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Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates by Nouws, Stéphanie, Bogaerts, Bert, Verhaegen, Bavo, Denayer, Sarah, Piérard, Denis, Marchal, Kathleen, Roosens, Nancy H. C., Vanneste, Kevin, De Keersmaecker, Sigrid C. J.

“…Whole genome sequencing (WGS) has proven to be the ultimate tool for bacterial isolate characterization and relatedness determination. However, standardized…”
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Detection and discrimination of five E. coli pathotypes using a combinatory SYBR® Green qPCR screening system by Barbau-Piednoir, Elodie, Denayer, Sarah, Botteldoorn, Nadine, Dierick, Katelijne, De Keersmaecker, Sigrid C. J., Roosens, Nancy H.

“…A detection and discrimination system for five Escherichia coli pathotypes, based on a combination of 13 SYBR® Green qPCR, has been developed, i.e.,…”
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Concise and Diversity-Oriented Route toward Polysubstituted 2-Aminoimidazole Alkaloids and Their Analogues by Ermolat'ev, Denis S, Bariwal, Jitender B, Steenackers, Hans P.L, De Keersmaecker, Sigrid C.J, Van der Eycken, Erik V

“…Alkaloids of the naamine family were synthesized from diverse propargylamines in just two steps (see scheme: R1=Me, R2=substituted benzyl, R3=Ar). Thus, the…”
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Identification of a Gene Cluster for the Biosynthesis of a Long, Galactose-Rich Exopolysaccharide in Lactobacillus rhamnosus GG and Functional Analysis of the Priming Glycosyltransferase by Lebeer, Sarah, Verhoeven, Tine L.A, Francius, Grégory, Schoofs, Geert, Lambrichts, Ivo, Dufrêne, Yves, Vanderleyden, Jos, De Keersmaecker, Sigrid C.J

“…Cell surface polysaccharides have an established role as virulence factors in human bacterial pathogens. Less documented are the biosynthesis and biological…”
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Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing by Fraiture, Marie-Alice, Bogaerts, Bert, Winand, Raf, Deckers, Marie, Papazova, Nina, Vanneste, Kevin, De Keersmaecker, Sigrid C. J., Roosens, Nancy H. C.

“…Recently, the unexpected presence of a viable unauthorized genetically modified bacterium in a commercialized food enzyme (protease) product originating from a…”
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Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java by Gand, Mathieu, Mattheus, Wesley, Saltykova, Assia, Roosens, Nancy, Dierick, Katelijne, Marchal, Kathleen, De Keersmaecker, Sigrid C. J., Bertrand, Sophie

“…Discriminating between d -tartrate fermenting and non-fermenting strains of Salmonella enterica subsp. enterica serotype Paratyphi B is of major importance as…”
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Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO by Fraiture, Marie-Alice, Saltykova, Assia, Hoffman, Stefan, Winand, Raf, Deforce, Dieter, Vanneste, Kevin, De Keersmaecker, Sigrid C. J., Roosens, Nancy H. C.

“…In order to strengthen the current genetically modified organism (GMO) detection system for unauthorized GMO, we have recently developed a new workflow based…”
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Impact of Environmental and Genetic Factors on Biofilm Formation by the Probiotic Strain Lactobacillus rhamnosus GG by Lebeer, Sarah, Verhoeven, Tine L.A, Perea Vélez, Mónica, Vanderleyden, Jos, De Keersmaecker, Sigrid C.J

“…Lactobacillus rhamnosus GG (ATCC 53103) is one of the clinically best-studied probiotic organisms. Moreover, L. rhamnosus GG displays very good in vitro…”
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Brominated Furanones Inhibit Biofilm Formation by Salmonella enterica Serovar Typhimurium by Janssens, Joost C.A, Steenackers, Hans, Robijns, Stijn, Gellens, Edith, Levin, Jeremy, Zhao, Hui, Hermans, Kim, De Coster, David, Verhoeven, Tine L, Marchal, Kathleen, Vanderleyden, Jos, De Vos, Dirk E, De Keersmaecker, Sigrid C.J

“…Salmonella enterica serovar Typhimurium is a main cause of bacterial food-borne diseases. As Salmonella can form biofilms in which it is better protected…”
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Adherence factors of Lactobacillus in the human gastrointestinal tract by Vélez, Mónica Perea, De Keersmaecker, Sigrid C.J, Vanderleyden, Jos

“…Despite the increasing number of scientific reports describing adhesion of Lactobacillus to components of the human intestinal mucosa, information on the…”
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NGS for (Hemato-) Oncology in Belgium: Evaluation of Laboratory Performance and Feasibility of a National External Quality Assessment Program by Delcourt, Thomas, Vanneste, Kevin, Soumali, Mohamed Rida, Coucke, Wim, Ghislain, Vanessa, Hebrant, Aline, Van Valckenborgh, Els, De Keersmaecker, Sigrid C. J., Roosens, Nancy H., Van De Walle, Philippe, Van Den Bulcke, Marc, Antoniou, Aline

“…Next-generation sequencing (NGS) is being integrated into routine clinical practice in the field of (hemato-) oncology to search for variants with diagnostic,…”
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Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database by Saltykova, Assia, Van Braekel, Julien, Papazova, Nina, Fraiture, Marie-Alice, Deforce, Dieter, Vanneste, Kevin, De Keersmaecker, Sigrid C.J., Roosens, Nancy H.

“…•Sequence-based database Nexplorer describing EU-authorized GMOs was developed.•Sequences were annotated and presented in structured and extractable…”
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The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country by Nouws, Stéphanie, Bogaerts, Bert, Verhaegen, Bavo, Denayer, Sarah, Crombé, Florence, De Rauw, Klara, Piérard, Denis, Marchal, Kathleen, Vanneste, Kevin, Roosens, Nancy H. C., De Keersmaecker, Sigrid C. J.

“…Gradually, conventional methods for foodborne pathogen typing are replaced by whole genome sequencing (WGS). Despite studies describing the overall benefits,…”
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multiplex oligonucleotide ligation-PCR as a complementary tool for subtyping of Salmonella Typhimurium by Wuyts, Véronique, Mattheus, Wesley, Roosens, Nancy H. C, Marchal, Kathleen, Bertrand, Sophie, De Keersmaecker, Sigrid C. J

“…Subtyping below the serovar level is essential for surveillance and outbreak detection and investigation of Salmonella enterica subsp. enterica serovar…”
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A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products by Buytaers, Florence E., Fraiture, Marie-Alice, Berbers, Bas, Vandermassen, Els, Hoffman, Stefan, Papazova, Nina, Vanneste, Kevin, Marchal, Kathleen, Roosens, Nancy H.C., De Keersmaecker, Sigrid C.J.

“…•The presence of GMM or its DNA in microbial fermentation products prohibited by EU.•The lack of appropriate detection tools challenges targeting unknown…”
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