Search Results - "Keeble‐Gagnere, Gabriel"

Optical maps refine the bread wheat Triticum aestivum cv. Chinese Spring genome assembly by Zhu, Tingting, Wang, Le, Rimbert, Hélène, Rodriguez, Juan C., Deal, Karin R., De Oliveira, Romain, Choulet, Frédéric, Keeble‐Gagnère, Gabriel, Tibbits, Josquin, Rogers, Jane, Eversole, Kellye, Appels, Rudi, Gu, Yong Q., Mascher, Martin, Dvorak, Jan, Luo, Ming‐Cheng

“…Summary Until recently, achieving a reference‐quality genome sequence for bread wheat was long thought beyond the limits of genome sequencing and assembly…”
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Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome by He, Fei, Pasam, Raj, Shi, Fan, Kant, Surya, Keeble-Gagnere, Gabriel, Kay, Pippa, Forrest, Kerrie, Fritz, Allan, Hucl, Pierre, Wiebe, Krystalee, Knox, Ron, Cuthbert, Richard, Pozniak, Curtis, Akhunova, Alina, Morrell, Peter L., Davies, John P., Webb, Steve R., Spangenberg, German, Hayes, Ben, Daetwyler, Hans, Tibbits, Josquin, Hayden, Matthew, Akhunov, Eduard

“…Introgression is a potential source of beneficial genetic diversity. The contribution of introgression to adaptive evolution and improvement of wheat as it was…”
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Linkage drag constrains the roots of modern wheat by Voss‐Fels, Kai P., Qian, Lunwen, Parra‐Londono, Sebastian, Uptmoor, Ralf, Frisch, Matthias, Keeble‐Gagnère, Gabriel, Appels, Rudi, Snowdon, Rod J.

“…Roots, the hidden half of crop plants, are essential for resource acquisition. However, knowledge about the genetic control of below‐ground plant development…”
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Genomic prediction for grain yield in a barley breeding program using genotype × environment interaction clusters by Lin, Zibei, Robinson, Hannah, Godoy, Jayfred, Rattey, Allan, Moody, David, Mullan, Daniel, Keeble‐Gagnere, Gabriel, Forrest, Kerrie, Tibbits, Josquin, Hayden, Matthew J., Daetwyler, Hans, Pino Del Carpio, Dunia

“…Genotype × environment interaction (GEI) is one of the key factors affecting breeding value estimation accuracy for agronomic traits in plant breeding…”
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Genomic signatures of barley breeding for environmental adaptation to the new continents by Hu, Haifei, Wang, Penghao, Angessa, Tefera Tolera, Zhang, Xiao‐Qi, Chalmers, Kenneth J., Zhou, Gaofeng, Hill, Camilla Beate, Jia, Yong, Simpson, Craig, Fuller, John, Saxena, Alka, Al Shamaileh, Hadi, Iqbal, Munir, Chapman, Brett, Kaur, Parwinder, Dudchenko, Olga, Aiden, Erez Lieberman, Keeble‐Gagnere, Gabriel, Westcott, Sharon, Leah, David, Tibbits, Josquin F., Waugh, Robbie, Langridge, Peter, Varshney, Rajeev, He, Tianhua, Li, Chengdao

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Improved multi-trait prediction of wheat end-product quality traits by integrating NIR-predicted phenotypes by Azizinia, Shiva, Mullan, Daniel, Rattey, Allan, Godoy, Jayfred, Robinson, Hannah, Moody, David, Forrest, Kerrie, Keeble-Gagnere, Gabriel, Hayden, Matthew J, Tibbits, Josquin Fg, Daetwyler, Hans D

“…Historically, end-product quality testing has been costly and required large flour samples; therefore, it was generally implemented in the late phases of…”
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Globular structures in roots accumulate phosphorus to extremely high concentrations following phosphorus addition by Ryan, Megan H., Kaur, Parwinder, Nazeri, Nazanin K., Clode, Peta L., Keeble‐Gagnère, Gabriel, Doolette, Ashlea L., Smernik, Ronald J., Van Aken, Olivier, Nicol, Dion, Maruyama, Hayato, Ezawa, Tatsuhiro, Lambers, Hans, Millar, A. Harvey, Appels, Rudi

“…Crops with improved uptake of fertilizer phosphorus (P) would reduce P losses and confer environmental benefits. We examined how P‐sufficient 6‐week‐old…”
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Benefit of Introgression Depends on Level of Genetic Trait Variation in Cereal Breeding Programmes by Li, Yongjun, Shi, Fan, Lin, Zibei, Robinson, Hannah, Moody, David, Rattey, Allan, Godoy, Jayfred, Mullan, Daniel, Keeble-Gagnere, Gabriel, Hayden, Matthew J., Tibbits, Josquin F. G., Daetwyler, Hans D.

“…We investigated the benefit from introgression of external lines into a cereal breeding programme and strategies that accelerated introgression of the…”
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Genome mapping of seed-borne allergens and immunoresponsive proteins in wheat by Juhász, Angéla, Belova, Tatiana, Florides, Chris G, Maulis, Csaba, Fischer, Iris, Gell, Gyöngyvér, Birinyi, Zsófia, Ong, Jamie, Keeble-Gagnère, Gabriel, Maharajan, Amudha, Ma, Wujun, Gibson, Peter, Jia, Jizeng, Lang, Daniel, Mayer, Klaus F X, Spannagl, Manuel, Tye-Din, Jason A, Appels, Rudi, Olsen, Odd-Arne

“…Wheat is an important staple grain for humankind globally because of its end-use quality and nutritional properties and its adaptability to diverse climates…”
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Transcriptome reprogramming due to the introduction of a barley telosome into bread wheat affects more barley genes than wheat by Rey, Elodie, Abrouk, Michael, Keeble‐Gagnère, Gabriel, Karafiátová, Miroslava, Vrána, Jan, Balzergue, Sandrine, Soubigou‐Taconnat, Ludivine, Brunaud, Véronique, Martin‐Magniette, Marie‐Laure, Endo, Takashi R., Bartoš, Jan, Appels, Rudi, Doležel, Jaroslav

“…Summary Despite a long history, the production of useful alien introgression lines in wheat remains difficult mainly due to linkage drag and incomplete genetic…”
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De novo assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genes by Barrero, Roberto A, Chapman, Brett, Yang, Yanfang, Moolhuijzen, Paula, Keeble-Gagnère, Gabriel, Zhang, Nan, Tang, Qi, Bellgard, Matthew I, Qiu, Deyou

“…Euphorbia fischeriana is an important medicinal plant found in Northeast China. The plant roots contain many medicinal compounds including…”
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Novel Design of Imputation-Enabled SNP Arrays for Breeding and Research Applications Supporting Multi-Species Hybridization by Keeble-Gagnère, Gabriel, Pasam, Raj, Forrest, Kerrie L, Wong, Debbie, Robinson, Hannah, Godoy, Jayfred, Rattey, Allan, Moody, David, Mullan, Daniel, Walmsley, Tresslyn, Daetwyler, Hans D, Tibbits, Josquin, Hayden, Matthew J

“…Array-based single nucleotide polymorphism (SNP) genotyping platforms have low genotype error and missing data rates compared to genotyping-by-sequencing…”
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Publisher Correction: Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome by He, Fei, Pasam, Raj, Shi, Fan, Kant, Surya, Keeble-Gagnere, Gabriel, Kay, Pippa, Forrest, Kerrie, Fritz, Allan, Hucl, Pierre, Wiebe, Krystalee, Knox, Ron, Cuthbert, Richard, Pozniak, Curtis, Akhunova, Alina, Morrell, Peter L., Davies, John P., Webb, Steve R., Spangenberg, German, Hayes, Ben, Daetwyler, Hans, Tibbits, Josquin, Hayden, Matthew, Akhunov, Eduard

“…An amendment to this paper has been published and can be accessed via a link at the top of the paper…”
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Fine physical and genetic mapping of powdery mildew resistance gene MlIW172 originating from wild emmer (Triticum dicoccoides) by Ouyang, Shuhong, Zhang, Dong, Han, Jun, Zhao, Xiaojie, Cui, Yu, Song, Wei, Huo, Naxin, Liang, Yong, Xie, Jingzhong, Wang, Zhenzhong, Wu, Qiuhong, Chen, Yong-Xing, Lu, Ping, Zhang, De-Yun, Wang, Lili, Sun, Hua, Yang, Tsomin, Keeble-Gagnere, Gabriel, Appels, Rudi, Doležel, Jaroslav, Ling, Hong-Qing, Luo, Mingcheng, Gu, Yongqiang, Sun, Qixin, Liu, Zhiyong

“…Powdery mildew, caused by Blumeria graminis f. sp. tritici, is one of the most important wheat diseases in the world. In this study, a single dominant powdery…”
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Haplotype-Based Genome-Wide Association Analysis Using Exome Capture Assay and Digital Phenotyping Identifies Genetic Loci Underlying Salt Tolerance Mechanisms in Wheat by Pasam, Raj K, Kant, Surya, Thoday-Kennedy, Emily, Dimech, Adam, Joshi, Sameer, Keeble-Gagnere, Gabriel, Forrest, Kerrie, Tibbits, Josquin, Hayden, Matthew

“…Soil salinity can impose substantial stress on plant growth and cause significant yield losses. Crop varieties tolerant to salinity stress are needed to…”
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Climate Clever Clovers: New Paradigm to Reduce the Environmental Footprint of Ruminants by Breeding Low Methanogenic Forages Utilizing Haplotype Variation by Kaur, Parwinder, Appels, Rudi, Bayer, Philipp E, Keeble-Gagnere, Gabriel, Wang, Jiankang, Hirakawa, Hideki, Shirasawa, Kenta, Vercoe, Philip, Stefanova, Katia, Durmic, Zoey, Nichols, Phillip, Revell, Clinton, Isobe, Sachiko N, Edwards, David, Erskine, William

“…Mitigating methane production by ruminants is a significant challenge to global livestock production. This research offers a new paradigm to reduce methane…”
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Bread matters: a national initiative to profile the genetic diversity of Australian wheat by Edwards, David, Wilcox, Stephen, Barrero, Roberto A, Fleury, Delphine, Cavanagh, Colin R, Forrest, Kerrie L, Hayden, Matthew J, Moolhuijzen, Paula, Keeble-Gagnère, Gabriel, Bellgard, Matthew I, Lorenc, Michał T, Shang, Catherine A, Baumann, Ute, Taylor, Jennifer M, Morell, Matthew K, Langridge, Peter, Appels, Rudi, Fitzgerald, Anna

“…The large and complex genome of wheat makes genetic and genomic analysis in this important species both expensive and resource intensive. The application of…”
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Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus by Barrero, Roberto A

“…Background: MicroRNAs (miRNAs) are small non-coding RNAs that act as regulators of gene expression in eukaryotes modulating a large diversity of biological…”
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Compact and evenly distributed k-mer binning for genomic sequences by Nyström-Persson, Johan, Keeble-Gagnère, Gabriel, Zawad, Niamat

“…Abstract Motivation The processing of k-mers (subsequences of length k) is at the foundation of many sequence processing algorithms in bioinformatics,…”
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Best practice data life cycle approaches for the life sciences [version 2; peer review: 2 approved] by Griffin, Philippa C, Khadake, Jyoti, LeMay, Kate S, Lewis, Suzanna E, Orchard, Sandra, Pask, Andrew, Pope, Bernard, Roessner, Ute, Russell, Keith, Seemann, Torsten, Treloar, Andrew, Tyagi, Sonika, Christiansen, Jeffrey H, Dayalan, Saravanan, Gladman, Simon, Hangartner, Sandra B, Hayden, Helen L, Ho, William W.H, Keeble-Gagnère, Gabriel, Korhonen, Pasi K, Neish, Peter, Prestes, Priscilla R, Richardson, Mark F, Watson-Haigh, Nathan S, Wyres, Kelly L, Young, Neil D, Schneider, Maria Victoria

“…Throughout history, the life sciences have been revolutionised by technological advances; in our era this is manifested by advances in instrumentation for data…”
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