Search Results - "Karpulevich, Evgeny"

Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index by Guguchkin, Egor, Kasianov, Artem, Belenikin, Maksim, Zobkova, Gaukhar, Kosova, Ekaterina, Makeev, Vsevolod, Karpulevich, Evgeny

“…Alignment of reads to a reference genome sequence is one of the key steps in the analysis of human whole-genome sequencing data obtained through…”
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Europeans and Americans of European origin show differences between their biological pathways related to the major histocompatibility complex by Vaulin, Andrey, Karpulevich, Evgeny, Kasianov, Artem, Morozova, Irina

“…In this study, we analysed biological pathway diversity among Europeans and Northern Americans of European origin, the groups of people that share a common…”
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Convolutional Neural Networks Can Predict Retinal Differentiation in Retinal Organoids by Kegeles, Evgenii, Naumov, Anton, Karpulevich, Evgeny A, Volchkov, Pavel, Baranov, Petr

“…We have developed a deep learning-based computer algorithm to recognize and predict retinal differentiation in stem cell-derived organoids based on…”
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Correction: Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index by Guguchkin, Egor, Kasianov, Artem, Belenikin, Maksim, Zobkova, Gaukhar, Kosova, Ekaterina, Makeev, Vsevolod, Karpulevich, Evgeny

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Biomedical Applications of Non-Small Cell Lung Cancer Spheroids by Rozenberg, Julian M, Filkov, Gleb I, Trofimenko, Alexander V, Karpulevich, Evgeny A, Parshin, Vladimir D, Royuk, Valery V, Sekacheva, Marina I, Durymanov, Mikhail O

“…Lung malignancies accounted for 11% of cancers worldwide in 2020 and remained the leading cause of cancer deaths. About 80% of lung cancers belong to non-small…”
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Deep Semantic Segmentation of Angiogenesis Images by Ibragimov, Alisher, Senotrusova, Sofya, Markova, Kseniia, Karpulevich, Evgeny, Ivanov, Andrei, Tyshchuk, Elizaveta, Grebenkina, Polina, Stepanova, Olga, Sirotskaya, Anastasia, Kovaleva, Anastasiia, Oshkolova, Arina, Zementova, Maria, Konstantinova, Viktoriya, Kogan, Igor, Selkov, Sergey, Sokolov, Dmitry

“…Angiogenesis is the development of new blood vessels from pre-existing ones. It is a complex multifaceted process that is essential for the adequate…”
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EndoNet: A Model for the Automatic Calculation of H-Score on Histological Slides by Ushakov, Egor, Naumov, Anton, Fomberg, Vladislav, Vishnyakova, Polina, Asaturova, Aleksandra, Badlaeva, Alina, Tregubova, Anna, Karpulevich, Evgeny, Sukhikh, Gennady, Fatkhudinov, Timur

“…H-score is a semi-quantitative method used to assess the presence and distribution of proteins in tissue samples by combining the intensity of staining and the…”
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EndoNuke: Nuclei Detection Dataset for Estrogen and Progesterone Stained IHC Endometrium Scans by Naumov, Anton, Ushakov, Egor, Ivanov, Andrey, Midiber, Konstantin, Khovanskaya, Tatyana, Konyukova, Alexandra, Vishnyakova, Polina, Nora, Sergei, Mikhaleva, Liudmila, Fatkhudinov, Timur, Karpulevich, Evgeny

“…We present EndoNuke, an open dataset consisting of tiles from endometrium immunohistochemistry slides with the nuclei annotated as keypoints. Several experts…”
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Comparative Analysis of the Transcriptome, Proteome, and miRNA Profile of Kupffer Cells and Monocytes by Elchaninov, Andrey, Lokhonina, Anastasia, Nikitina, Maria, Vishnyakova, Polina, Makarov, Andrey, Arutyunyan, Irina, Poltavets, Anastasiya, Kananykhina, Evgenia, Kovalchuk, Sergey, Karpulevich, Evgeny, Bolshakova, Galina, Sukhikh, Gennady, Fatkhudinov, Timur

“…Macrophage populations in most mammalian organs consist of cells of different origin. Resident macrophages originate from erythromyeloid precursors of the yolk…”
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Neural network interpretation techniques for analysis of histological images of breast abnormalities by Fomina, Anna V., Borbat, Artem M., Karpulevich, Evgeny A., Naumov, Anton Yu

“…Background. Neural networks are actively used in digital pathology to analyze histological images and support medical decision-making. A common approach is to…”
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Modification of the Method for Calculating Polygenic Risks With Variation Graph by Kondrateva, Olesia, Karpulevich, Evgeny

“…Representation of the DNA sequence is possible in various ways. The variation graph is one of the most accurate methods that allows you to work with atypical…”
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Modification of the short read alignment algorithm to improve the quality of the human whole genome sequencing data processing pipeline by Guguchkin, Egor Pavlovich, Karpulevich, Evgeny Andreevich

“…This study emphasizes the importance of aligning short reads in the analysis of human whole-genome sequencing data. The alignment process involves determining…”
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A New Approach of Detecting ALK Fusion Oncogenes by RNA Sequencing Exon Coverage Analysis by Zakharova, Galina, Suntsova, Maria, Rabushko, Elizaveta, Mohammad, Tharaa, Drobyshev, Alexey, Seryakov, Alexander, Poddubskaya, Elena, Moisseev, Alexey, Smirnova, Anastasia, Sorokin, Maxim, Tkachev, Victor, Simonov, Alexander, Guguchkin, Egor, Karpulevich, Evgeny, Buzdin, Anton

“…Background: In clinical practice, various methods are used to identify ALK gene rearrangements in tumor samples, ranging from “classic” techniques, such as…”
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Diagnosis of left atrial and left ventricular hypertrophies using a deep neural network by Andreev, Pavel, Ananev, Vladislav, Makarov, Vladimir, Karpulevich, Evgeny, Turdakov, Denis

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Application of HDBSСAN Method for Clustering scRNA-seq Data by Akimenkova, Maria Andreevna, Maznina, Anna Anatolyevna, Naumov, Anton Yurievich, Karpulevich, Evgeny Andreevich

“…One of the main tasks in the analysis of single cell RNA sequencing (scRNA-seq) data is the identification of cell types and subtypes, which is usually based…”
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Methods for determining the elements of the PQRST-complex of the electrocardiogram by Mashkova, Olga Anatolyevna, Shaklein, Vsevolod Vladislavovich, Markin, Yury Vitalievich, Karpulevich, Evgeny Andreevich, Ananev, Vladislav Valerievich, Asatryan, Ariana Armenovna, Tigranyan, Shagane Tigranovna, Skorik, Sergej Nikolaevich, Turdakov, Denis Yuryevich

“…An electrocardiogram (ECG) is one of the most common medical examinations. High-quality interpretation of a 12-channel electrocardiogram is important for…”
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Assessment of the impact of non-architectural changes in the predictive model on the quality of ECG classification by Ananev, Vladislav Valerievich, Skorik, Sergej Nikolaevich, Shaklein, Vsevolod Vladislavovich, Avetisyan, Aram Arutyunovich, Teregulov, Yurij Emilevich, Turdakov, Denis Yuryevich, Gliner, Vadim, Schuster, Assaf, Karpulevich, Evgeny Andreevich

“…Recording and analyzing 12-lead electrocardiograms is the most common procedure for detecting heart disease. Recently, various deep learning methods have been…”
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MamT$^4$: Multi-view Attention Networks for Mammography Cancer Classification by Ibragimov, Alisher, Senotrusova, Sofya, Litvinov, Arsenii, Ushakov, Egor, Karpulevich, Evgeny, Markin, Yury

“…In this study, we introduce a novel method, called MamT$^4$, which is used for simultaneous analysis of four mammography images. A decision is made based on…”
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MamT4: Multi-View Attention Networks for Mammography Cancer Classification by Ibragimov, Alisher, Senotrusova, Sofya, Litvinov, Arsenii, Ushakov, Egor, Karpulevich, Evgeny, Markin, Yury

“…In this study, we introduce a novel method, called \text{MamT}^4 , which is used for simultaneous analysis of four mammography images. A decision is made based…”
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EndoNet: model for automatic calculation of H-score on histological slides by Ushakov, Egor, Naumov, Anton, Fomberg, Vladislav, Vishnyakova, Polina, Asaturova, Aleksandra, Badlaeva, Alina, Tregubova, Anna, Karpulevich, Evgeny, Sukhikh, Gennady, Fatkhudinov, Timur

“…H-score is a semi-quantitative method used to assess the presence and distribution of proteins in tissue samples by combining the intensity of staining and…”
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