Search Results - "Kandasamy, Senthil K."

The MARTINI Coarse-Grained Force Field: Extension to Proteins by Monticelli, Luca, Kandasamy, Senthil K., Periole, Xavier, Larson, Ronald G., Tieleman, D. Peter, Marrink, Siewert-Jan

“…Many biologically interesting phenomena occur on a time scale that is too long to be studied by atomistic simulations. These phenomena include the dynamics of…”
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Molecular Dynamics Simulations of Model Trans-Membrane Peptides in Lipid Bilayers: A Systematic Investigation of Hydrophobic Mismatch by Kandasamy, Senthil K., Larson, Ronald G.

“…Hydrophobic mismatch, which is the difference between the hydrophobic length of trans-membrane segments of a protein and the hydrophobic width of the…”
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Cation and anion transport through hydrophilic pores in lipid bilayers by Kandasamy, Senthil K, Larson, Ronald G

“…To understand the origin of transmembrane potentials, formation of transient pores, and the movement of anions and cations across lipid membranes, we have…”
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Effect of salt on the interactions of antimicrobial peptides with zwitterionic lipid bilayers by Kandasamy, Senthil K., Larson, Ronald G.

“…The effect of salt on the binding of the antimicrobial peptide magainin to POPC lipid bilayers is studied by 40–50 ns molecular dynamics simulations of a POPC…”
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Structure, Topology, and Tilt of Cell-Signaling Peptides Containing Nuclear Localization Sequences in Membrane Bilayers Determined by Solid-State NMR and Molecular Dynamics Simulation Studies by Ramamoorthy, Ayyalusamy, Kandasamy, Senthil K, Lee, Dong-Kuk, Kidambi, Srikanth, Larson, Ronald G

“…Cell-signaling peptides have been extensively used to transport functional molecules across the plasma membrane into living cells. These peptides consist of a…”
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Solid-state NMR and molecular dynamics simulations reveal the oligomeric ion-channels of TM2-GABA A stabilized by intermolecular hydrogen bonding by Kandasamy, Senthil K., Lee, Dong-Kuk, Nanga, Ravi P.R., Xu, Jiadi, Santos, Jose S., Larson, Ronald G., Ramamoorthy, Ayyalusamy

“…The second transmembrane (TM2) domain of GABA A receptor forms the inner-lining surface of chloride ion-channel and plays important roles in the function of…”
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Solid-state NMR and molecular dynamics simulations reveal the oligomeric ion-channels of TM2-GABAA stabilized by intermolecular hydrogen bonding by Kandasamy, Senthil K., Lee, Dong-Kuk, Nanga, Ravi P.R., Xu, Jiadi, Santos, Jose S., Larson, Ronald G., Ramamoorthy, Ayyalusamy

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Binding and insertion of α-helical anti-microbial peptides in POPC bilayers studied by molecular dynamics simulations by Kandasamy, Senthil K., Larson, Ronald G.

“…We have performed molecular dynamics simulations of the interactions of two α-helical anti-microbial peptides, magainin2 and its synthetic analog of MSI-78,…”
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Molecular Dynamics Study of the Lung Surfactant Peptide SP-B1–25 with DPPC Monolayers: Insights into Interactions and Peptide Position and Orientation by Kandasamy, Senthil K., Larson, Ronald G.

“…We have performed molecular dynamics simulations of the interactions of the peptide SP-B1–25, which is a truncated version of the full pulmonary surfactant…”
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Molecular dynamics simulations of the anchoring and tilting of the lung-surfactant peptide SP-B1-25 in palmitic acid monolayers by Lee, Hwankyu, Kandasamy, Senthil K, Larson, Ronald G

“…We have performed molecular dynamics simulations of multiple copies of the lung-surfactant peptide SP-B1-25 in a palmitic acid (PA) monolayer. SP-B1-25 is a…”
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Molecular Dynamics Study of the Lung Surfactant Peptide SP-B^sub 1-25^ with DPPC Monolayers: Insights into Interactions and Peptide Position and Orientation by Kandasamy, Senthil K, Larson, Ronald G

“…We have performed molecular dynamics simulations of the interactions of the peptide SP-B^sub 1-25^, which is a truncated version of the full pulmonary…”
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Molecular Dynamics Simulations of the Anchoring and Tilting of the Lung-Surfactant Peptide SP-B^sub 1-25^ in Palmitic Acid Monolayers by Lee, Hwankyu, Kandasamy, Senthil K, Larson, Ronald G

“…We have performed molecular dynamics simulations of multiple copies of the lung-surfactant peptide SP-B^sub 1-25^ in a palmitic acid (PA) monolayer. SP-B^sub…”
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Molecular Dynamics Simulations of the Anchoring and Tilting of the Lung-Surfactant Peptide SP-B 1-25 in Palmitic Acid Monolayers by Lee, Hwankyu, Kandasamy, Senthil K., Larson, Ronald G.

“…We have performed molecular dynamics simulations of multiple copies of the lung-surfactant peptide SP-B 1-25 in a palmitic acid (PA) monolayer. SP-B 1-25 is a…”
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