Search Results - "Kanapin, A. A"

Disruption of SF3B1 results in deregulated expression and splicing of key genes and pathways in myelodysplastic syndrome hematopoietic stem and progenitor cells by Dolatshad, H, Pellagatti, A, Fernandez-Mercado, M, Yip, B H, Malcovati, L, Attwood, M, Przychodzen, B, Sahgal, N, Kanapin, A A, Lockstone, H, Scifo, L, Vandenberghe, P, Papaemmanuil, E, Smith, C W J, Campbell, P J, Ogawa, S, Maciejewski, J P, Cazzola, M, Savage, K I, Boultwood, J

“…The splicing factor SF3B1 is the most commonly mutated gene in the myelodysplastic syndrome (MDS), particularly in patients with refractory anemia with ring…”
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Reactome knowledgebase of human biological pathways and processes by Matthews, Lisa, Gopinath, Gopal, Gillespie, Marc, Caudy, Michael, Croft, David, de Bono, Bernard, Garapati, Phani, Hemish, Jill, Hermjakob, Henning, Jassal, Bijay, Kanapin, Alex, Lewis, Suzanna, Mahajan, Shahana, May, Bruce, Schmidt, Esther, Vastrik, Imre, Wu, Guanming, Birney, Ewan, Stein, Lincoln, D'Eustachio, Peter

“…Reactome (http://www.reactome.org) is an expert-authored, peer-reviewed knowledgebase of human reactions and pathways that functions as a data mining resource…”
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Transcriptional Landscape of the Mammalian Genome by Carninci, P, Kasukawa, T, Katayama, S, Gough, J, Frith, M. C, Maeda, N, Oyama, R, Lenhard, B, Wells, C, Bajic, V. B, Brenner, S. E, Batalov, S, Forrest, A. R. R, Zavolan, M, Wilming, L. G, Ambesi-Impiombato, A, Aturaliya, R. N, Bailey, T. L, Bansal, M, Baxter, L, Beisel, K. W, Bono, H, Chalk, A. M, Chiu, K. P, Christoffels, A, Dalla, E, Dalrymple, B. P, de Bono, B, Down, T, Engstrom, P, Fagiolini, M, Faulkner, G, Furuno, M, Gingeras, T. R, Gojobori, T, Gustincich, S, Harbers, M, Hensch, T. K, Hirokawa, N, Hill, D, Ikeo, K, Ishikawa, T, Jakt, M, Kanapin, A, Katoh, M, Kawasawa, Y, Kitano, H, Kollias, G, Kurochkin, I. V, Lareau, L. F, Liu, J, Liuni, S, Madera, M, Matsuda, H, Matsuzawa, S, Morris, K, Nakano, N, Nishiguchi, S, Nishikawa, S, Nori, F, Pesole, G, Reed, J, Ruan, Y, Salzberg, S. L, Schneider, C, Sekiguchi, K, Semple, C. A. M, Sessa, L, Sheng, Y, Shibata, Y, Shimada, K, Sinclair, B, Sperling, S, Sultana, R, Taki, K, Ueda, H. R, Wei, C. L, Yamanishi, H, Zabarovsky, E, Zhu, S, Hide, W, Bult, C, Teasdale, R. D, Liu, E. T, Mattick, J. S, Hume, D. A, Kai, C, Sasaki, D, Kanamori-Katayama, M, Suzuki, M, Imamura, K, Itoh, M, Kato, T, Kawagashira, N, Nakano, K, Ninomiya, N, Okada, M, Suzuki, S, Watahiki, A, Kawai, J

“…This study describes comprehensive polling of transcription start and termination sites and analysis of previously unidentified full-length complementary DNAs…”
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Interplay between RNA interference and heat shock response systems in Drosophila melanogaster by Funikov, S. Yu, Ryazansky, S. S., Kanapin, A. A., Logacheva, M. D., Penin, A. A., Snezhkina, A. V., Shilova, V. Yu, Garbuz, D. G., Evgen'ev, M. B., Zatsepina, O. G.

“…The genome expression pattern is strongly modified during the heat shock response (HSR) to form an adaptive state. This may be partly achieved by modulating…”
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The InterPro Database, 2003 brings increased coverage and new features by Mulder, Nicola J., Apweiler, Rolf, Attwood, Teresa K., Bairoch, Amos, Barrell, Daniel, Bateman, Alex, Binns, David, Biswas, Margaret, Bradley, Paul, Bork, Peer, Bucher, Phillip, Copley, Richard R., Courcelle, Emmanuel, Das, Ujjwal, Durbin, Richard, Falquet, Laurent, Fleischmann, Wolfgang, Griffiths-Jones, Sam, Haft, Daniel, Harte, Nicola, Hulo, Nicolas, Kahn, Daniel, Kanapin, Alexander, Krestyaninova, Maria, Lopez, Rodrigo, Letunic, Ivica, Lonsdale, David, Silventoinen, Ville, Orchard, Sandra E., Pagni, Marco, Peyruc, David, Ponting, Chris P., Selengut, Jeremy D., Servant, Florence, Sigrist, Christian J. A., Vaughan, Robert, Zdobnov, Evgueni M.

“…InterPro, an integrated documentation resource of protein families, domains and functional sites, was created in 1999 as a means of amalgamating the major…”
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Disruption of SF3B1 results in deregulated expression and splicing of key genes and pathways in myelodysplastic syndrome hematopoietic stem and progenitor cells by Dolatshad, H, Pellagatti, A, Fernandez-Mercado, M, Yip, B H, Malcovati, L, Attwood, M, Przychodzen, B, Sahgal, N, Kanapin, A A, Lockstone, H, Scifo, L, Vandenberghe, P, Papaemmanuil, E, Smith, C W J, Campbell, P J, Ogawa, S, Maciejewski, J P, Cazzola, M, Savage, K I, Boultwood, J

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The InterPro database, an integrated documentation resource for protein families, domains and functional sites by Apweiler, R, Attwood, T K, Bairoch, A, Bateman, A, Birney, E, Biswas, M, Bucher, P, Cerutti, L, Corpet, F, Croning, M D, Durbin, R, Falquet, L, Fleischmann, W, Gouzy, J, Hermjakob, H, Hulo, N, Jonassen, I, Kahn, D, Kanapin, A, Karavidopoulou, Y, Lopez, R, Marx, B, Mulder, N J, Oinn, T M, Pagni, M, Servant, F, Sigrist, C J, Zdobnov, E M

“…Signature databases are vital tools for identifying distant relationships in novel sequences and hence for inferring protein function. InterPro is an…”
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Modular Quantum Key Distribution Setup for Research and Development Applications by Rodimin, V. E., Kiktenko, E. O., Usova, V. V., Ponomarev, M. Y., Kazieva, T. V., Miller, A. V., Sokolov, A. S., Kanapin, A. A., Losev, A. V., Trushechkin, A. S., Anufriev, M. N., Pozhar, N. O., Kurochkin, V. L., Kurochkin, Y. V., Fedorov, A. K.

“…Quantum key distribution (QKD), ensuring the unconditional security of information, attracts a significant deal of interest. An important task is to design QKD…”
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InterPro—an integrated documentation resource for protein families, domains and functional sites by Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Birney, E., Biswas, M., Bucher, P., Cerutti, L., Corpet, F., Croning, M. D. R., Durbin, R., Falquet, L., Fleischmann, W., Gouzy, J., Hermjakob, H., Hulo, N., Jonassen, I., Kahn, D., Kanapin, A., Karavidopoulou, Y., Lopez, R., Marx, B., Mulder, N. J., Oinn, T. M., Pagni, M., Servant, F., Sigrist, C. J. A., Zdobnov, E. M.

“…Motivation: InterPro is a new integrated documentation resource for protein families, domains and functional sites, developed initially as a means of…”
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Analysis of the Coverage of Alu Elements by Aligned Genomic Reads by Tamazian, G. S., Kanapin, A. A., Samsonova, A. A.

“…Alu elements constitute a notable part of the human genome and greatly affect processes related to maintenance of genome integrity. One of the basic methods…”
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Genetic Determinants of Flax Genome Integrity by Kanapin, A. A., Samsonova, A. A.

“…Recent advances in high-throughput sequencing have enabled the development of a novel approach to the evaluation of genome stability and integrity. The depth…”
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Projection of gene-protein networks to the functional space of the proteome and its application to analysis of organism complexity by Kanapin, Alexander A, Mulder, Nicola, Kuznetsov, Vladimir A

“…We consider the problem of biological complexity via a projection of protein-coding genes of complex organisms onto the functional space of the proteome. The…”
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Identification of Two QTLs Controlling Flax Resistance to Fusarium Wilt by Rozhmina, T. A., Kanapin, A. A., Bankin, M. P., Samsonova, M. G.

“…A bulk segregant analysis (BSA) was used to analyze the F 2 population from crossing two flax varieties that differ in fusarium wilt resistance genes. The…”
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Integr8 and Genome Reviews: integrated views of complete genomes and proteomes by Kersey, Paul, Bower, Lawrence, Morris, Lorna, Horne, Alan, Petryszak, Robert, Kanz, Carola, Kanapin, Alexander, Das, Ujjwal, Michoud, Karine, Phan, Isabelle, Gattiker, Alexandre, Kulikova, Tamara, Faruque, Nadeem, Duggan, Karyn, Mclaren, Peter, Reimholz, Britt, Duret, Laurent, Penel, Simon, Reuter, Ingmar, Apweiler, Rolf

“…Integr8 is a new web portal for exploring the biology of organisms with completely deciphered genomes. For over 190 species, Integr8 provides access to general…”
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Searching for Sequencing Signal Anomalies Associated with Genomic Structural Variations by Bezdvornykh, I. V., Cherkasov, N. A., Kanapin, A. A., Samsonova, A. A.

“…Genomic structural variations (SVs) are among the main sources of genetic diversity. Structural variants as mutagens may significantly affect human health,…”
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A Toolbox for Visualization of Sequencing Coverage Signal by Bezdvornykh, I. V., Cherkasov, N. A., Kanapin, A. A., Samsonova, A. A.

“…Whole genome sequencing data allow access not only to information about genetic variation, but also provide an opportunity to evaluate the overall genome…”
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Genome-Wide Association Study of Copy Number Variation in Flax Through the Lens of Genome Integrity by Duk, M. A., Kanapin, A. A., Rozhmina, T. A., Samsonova, A. A.

“…Classical methods for identification of genetic variants associated with certain macroscopic phenotypic traits are, as a rule, limited to analysis of single…”
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Genome-Wide Association Analysis in Chickpea Landraces and Cultivars by Duk, M. A., Kanapin, A. A., Bankin, M. P., Vishnyakova, M. A., Bulyntsev, S. V., Samsonova, M. G.

“…The chickpea Cicer arientinum is an important leguminous crop and is especially widely grown in the Near East. Because chickpea is highly susceptible to fungal…”
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Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes by Apweiler, R, Biswas, M, Fleischmann, W, Kanapin, A, Karavidopoulou, Y, Kersey, P, Kriventseva, E V, Mittard, V, Mulder, N, Phan, I, Zdobnov, E

“…The SWISS-PROT group at EBI has developed the Proteome Analysis Database utilising existing resources and providing comparative analysis of the predicted…”
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Low loss QKD optical scheme for fast polarization encoding by Duplinskiy, A., Ustimchik, V., Kanapin, A., Kurochkin, V., Kurochkin, Y.

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