Search Results - "Kahraman, Osman"
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1
Searching for empirical evidence on traffic equilibrium
Published in PloS one (07-05-2018)“…Cities around the world are inundated by cars and suffer traffic congestion that results in excess delays, reduced safety and environmental pollution. The…”
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2
Fluid membrane vesicles in confinement
Published in New journal of physics (25-09-2012)“…We numerically study the morphology of fluid membrane vesicles with the prescribed volume and surface area in confinement. For spherical confinement, we…”
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Directed Supramolecular Organization of N-BAR Proteins through Regulation of H0 Membrane Immersion Depth
Published in Scientific reports (06-11-2018)“…Many membrane remodeling events rely on the ability of curvature-generating N-BAR membrane proteins to organize into distinctive supramolecular configurations…”
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Supramolecular organization of membrane proteins with anisotropic hydrophobic thickness
Published in Soft matter (29-05-2019)“…Experiments have revealed that membrane proteins often self-assemble into locally ordered clusters. Such membrane protein lattices can play key roles in the…”
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Symmetry and Size of Membrane Protein Polyhedral Nanoparticles
Published in Physical review letters (23-09-2016)“…In recent experiments [T. Basta et al., Proc. Natl. Acad. Sci. U.S.A. 111, 670 (2014)] lipids and membrane proteins were observed to self-assemble into…”
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6
Stochastic Single-Molecule Dynamics of Synaptic Receptor Domains
Published in Biophysical journal (16-02-2016)Get full text
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Symmetry and Size of Membrane Protein Polyhedral Nanoparticles
Published in Biophysical journal (16-02-2016)Get full text
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8
Controlling the shape of membrane protein polyhedra
Published in Europhysics letters (01-03-2017)“…Membrane proteins and lipids can self-assemble into membrane protein polyhedral nanoparticles (MPPNs). MPPNs have a closed spherical surface and a polyhedral…”
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Stochastic single-molecule dynamics of synaptic membrane protein domains
Published in Europhysics letters (01-09-2016)“…Motivated by single-molecule experiments on synaptic membrane protein domains, we use a stochastic lattice model to study protein reaction and diffusion…”
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10
Thermodynamic competition between membrane protein oligomeric states
Published in Europhysics letters (01-10-2016)“…Self-assembly of protein monomers into distinct membrane protein oligomers provides a general mechanism for diversity in the molecular architectures, and…”
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Regulation of membrane proteins through local heterogeneity in lipid bilayer thickness
Published in Physical review. E (01-12-2020)“…Cell membranes show an intricate organization of lipids and membrane proteins into domains with distinct composition and hydrophobic thickness. Using…”
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12
Architecture and Function of Mechanosensitive Membrane Protein Lattices
Published in Scientific reports (14-01-2016)“…Experiments have revealed that membrane proteins can form two-dimensional clusters with regular translational and orientational protein arrangements, which may…”
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13
Oligomeric States and Cooperative Gating in Clusters of Mechanosensitive Membrane Proteins
Published in Biophysical journal (28-01-2014)Get full text
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14
Signatures of protein structure in the cooperative gating of mechanosensitive ion channels
Published in Europhysics letters (01-08-2014)“…Membrane proteins deform the surrounding lipid bilayer, which can lead to membrane-mediated interactions between neighboring proteins. Using the…”
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Do Anti-TNF Agents Increase the Risk of Inflammatory Bowel Disease Evolution in Patients with Ankylosing Spondylitis? Real Life Data
Published in Journal of the National Medical Association (01-06-2019)“…The aim of this study was to determine whether there is any association with anti-tumor necrosis factor (TNF) agent administration and development of new-onset…”
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Symmetry of membrane protein polyhedra with heterogeneous protein size
Published in Physical review. E (01-02-2020)“…In experiments on membrane protein polyhedral nanoparticles (MPPNs) [Basta et al., Proc. Natl. Acad. Sci. USA 111, 670…”
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Stochastic lattice model of synaptic membrane protein domains
Published in Physical review. E (01-05-2017)“…Neurotransmitter receptor molecules, concentrated in synaptic membrane domains along with scaffolds and other kinds of proteins, are crucial for signal…”
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Symmetry and Stability of Membrane Protein Lattices
Published in Biophysical journal (28-01-2014)Get full text
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19
Dipoles in thin sheets
Published in The European physical journal. E, Soft matter and biological physics (01-09-2013)“…A flat elastic sheet may contain pointlike conical singularities that carry a metrical “charge” of Gaussian curvature. Adding such elementary defects to a…”
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20
Confotronic dynamics of tubular filaments
Published in Soft matter (28-04-2014)“…Tubular lattices are ubiquitous in nature and technology. Microtubules and nanotubes of all kinds act as important pillars of biological cells and the man-made…”
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