Search Results - "Kadie, Carl M."

HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins by Brumme, Zabrina L, John, Mina, Carlson, Jonathan M, Brumme, Chanson J, Chan, Dennison, Brockman, Mark A, Swenson, Luke C, Tao, Iris, Szeto, Sharon, Rosato, Pamela, Sela, Jennifer, Kadie, Carl M, Frahm, Nicole, Brander, Christian, Haas, David W, Riddler, Sharon A, Haubrich, Richard, Walker, Bruce D, Harrigan, P Richard, Heckerman, David, Mallal, Simon

“…Despite the extensive genetic diversity of HIV-1, viral evolution in response to immune selective pressures follows broadly predictable mutational patterns…”
Get full text

Early Selection in Gag by Protective HLA Alleles Contributes to Reduced HIV-1 Replication Capacity That May Be Largely Compensated for in Chronic Infection by BROCKMAN, Mark A, BRUMME, Zabrina L, KELLEHER, Anthony D, MARKOWITZ, Martin, JESSEN, Heiko, ROSENBERG, Eric, ALTFELD, Marcus, HARRIGAN, P. Richard, HECKERMAN, David, WALKER, Bruce D, ALLEN, Todd M, BRUMME, Chanson J, MIURA, Toshiyuki, SELA, Jennifer, ROSATO, Pamela C, KADIE, Carl M, CARLSON, Jonathan M, MARKLE, Tristan J, STREECK, Hendrik

“…Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
Get full text

Gag-Protease-Mediated Replication Capacity in HIV-1 Subtype C Chronic Infection: Associations with HLA Type and Clinical Parameters by WRIGHT, Jaclyn K, BRUMME, Zabrina L, VAN DER STOK, Mary, MNCUBE, Zenele, BISHOP, Karen, GOULDER, Philip J. R, WALKER, Bruce D, BROCKMAN, Mark A, NDUNG'U, Thumbi, CARLSON, Jonathan M, HECKERMAN, David, KADIE, Carl M, BRUMME, Chanson J, BINGXIA WANG, LOSINA, Elena, MIURA, Toshiyuki, CHONCO, Fundisiwe

“…Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
Get full text

FaST linear mixed models for genome-wide association studies by Lippert, Christoph, Listgarten, Jennifer, Liu, Ying, Kadie, Carl M, Davidson, Robert I, Heckerman, David

“…An algorithm for linear mixed models substantially reduces memory usage and run time for genome-wide association studies. The improved algorithm scales…”
Get full text

Reduced Replication Capacity of NL4-3 Recombinant Viruses Encoding Reverse Transcriptase–Integrase Sequences From HIV-1 Elite Controllers by Brumme, Zabrina L, Li, Chun, Miura, Toshiyuki, Sela, Jennifer, Rosato, Pamela C, Brumme, Chanson J, Markle, Tristan J, Martin, Eric, Block, Brian L, Trocha, Alicja, Kadie, Carl M, Allen, Todd M, Pereyra, Florencia, Heckerman, David, Walker, Bruce D, Brockman, Mark A

“…BACKGROUND:Identifying viral and host determinants of HIV-1 elite control may help inform novel therapeutic and/or vaccination strategies. Previously, we…”
Get full text

Improved linear mixed models for genome-wide association studies by Listgarten, Jennifer, Lippert, Christoph, Kadie, Carl M, Davidson, Robert I, Eskin, Eleazar, Heckerman, David

Get full text

HIV-1 adaptation to NK-cell-mediated immune pressure by Alter, Galit, Heckerman, David, Schneidewind, Arne, Fadda, Lena, Kadie, Carl M., Carlson, Jonathan M., Oniangue-Ndza, Cesar, Martin, Maureen, Li, Bin, Khakoo, Salim I., Carrington, Mary, Allen, Todd M., Altfeld, Marcus

“…Natural killer cells and the control of HIV-1 Recent work has suggested that natural killer (NK) cells contribute to the control of HIV-1 infection through…”
Get full text

A powerful and efficient set test for genetic markers that handles confounders by Listgarten, Jennifer, Lippert, Christoph, Kang, Eun Yong, Xiang, Jing, Kadie, Carl M, Heckerman, David

“…Approaches for testing sets of variants, such as a set of rare or common variants within a gene or pathway, for association with complex traits are important…”
Get full text

The benefits of selecting phenotype-specific variants for applications of mixed models in genomics by Lippert, Christoph, Quon, Gerald, Kang, Eun Yong, Kadie, Carl M., Listgarten, Jennifer, Heckerman, David

“…Applications of linear mixed models (LMMs) to problems in genomics include phenotype prediction, correction for confounding in genome-wide association studies,…”
Get full text

An Exhaustive Epistatic SNP Association Analysis on Expanded Wellcome Trust Data by Lippert, Christoph, Listgarten, Jennifer, Davidson, Robert I., Baxter, Jeff, Poon, Hoifung, Kadie, Carl M., Heckerman, David

“…We present an approach for genome-wide association analysis with improved power on the Wellcome Trust data consisting of seven common phenotypes and shared…”
Get full text

CORRIGENDUM: An Exhaustive Epistatic SNP Association Analysis on Expanded Wellcome Trust Data by Lippert, Christoph, Listgarten, Jennifer, Davidson, Robert I, Baxter, Jeff, Poon, Hoifung, Kadie, Carl M, Heckerman, David

Get full text

The Major Genetic Determinants of HIV-1 Control Affect HLA Class I Peptide Presentation by Pereyra, Florencia, Jia, Xiaoming, McLaren, Paul J, Telenti, Amalio, de Bakker, Paul I W, Walker, Bruce D, Ripke, Stephan, Brumme, Chanson J, Pulit, Sara L, Carrington, Mary, Kadie, Carl M, Carlson, Jonathan M, Heckerman, David, Graham, Robert R, Plenge, Robert M, Deeks, Steven G, Gianniny, Lauren, Crawford, Gabriel, Sullivan, Jordan, Gonzalez, Elena, Davies, Leela, Camargo, Amy, Moore, Jamie M, Beattie, Nicole, Gupta, Supriya, Crenshaw, Andrew, Burtt, Noël P, Guiducci, Candace, Gupta, Namrata, Gao, Xiaojiang, Qi, Ying, Yuki, Yuko, Piechocka-Trocha, Alicja, Cutrell, Emily, Rosenberg, Rachel, Moss, Kristin L, Lemay, Paul, O'Leary, Jessica, Schaefer, Todd, Verma, Pranshu, Toth, Ildiko, Block, Brian, Baker, Brett, Rothchild, Alissa, Lian, Jeffrey, Proudfoot, Jacqueline, Alvino, Donna Marie L, Vine, Seanna, Addo, Marylyn M, Allen, Todd M, Altfeld, Marcus, Henn, Matthew R, Le Gall, Sylvie, Streeck, Hendrik, Haas, David W, Kuritzkes, Daniel R, Robbins, Gregory K, Shafer, Robert W, Gulick, Roy M, Shikuma, Cecilia M, Haubrich, Richard, Riddler, Sharon, Sax, Paul E, Daar, Eric S, Ribaudo, Heather J, Agan, Brian, Agarwal, Shanu, Ahern, Richard L, Allen, Brady L, Altidor, Sherly, Altschuler, Eric L, Ambardar, Sujata, Anastos, Kathryn, Anderson, Ben, Anderson, Val, Andrady, Ushan, Antoniskis, Diana, Bangsberg, David, Barbaro, Daniel, Barrie, William, Bartczak, J, Barton, Simon, Basden, Patricia, Basgoz, Nesli, Bazner, Suzane, Bellos, Nicholaos C, Benson, Anne M, Berger, Judith, Bernard, Nicole F, Bernard, Annette M, Birch, Christopher, Bodner, Stanley J, Bolan, Robert K, Boudreaux, Emilie T, Bradley, Meg, Braun, James F, Brndjar, Jon E, Brown, Stephen J, Brown, Katherine, Brown, Sheldon T

“…Infectious and inflammatory diseases have repeatedly shown strong genetic associations within the major histocompatibility complex (MHC); however, the basis…”
Get full text

Fine-mapping classical HLA variation associated with durable host control of HIV-1 infection in African Americans by MCLAREN, Paul J, RIPKE, Stephan, GUPTA, Namrata, HAAS, David W, DEEKS, Steven G, PEREYRA, Florencia, WALKER, Bruce D, DE BAKKER, Paul I. W, PELAK, Kimberly, WEINTROB, Amy C, PATSOPOULOS, Nikolaos A, XIAOMING JIA, ERLICH, Rachel L, LENNON, Niall J, KADIE, Carl M, HECKERMAN, David

“…A small proportion of human immunodeficiency virus-1 (HIV-1) infected individuals, termed HIV-1 controllers, suppress viral replication to very low levels in…”
Get full text

Correction: Corrigendum: An Exhaustive Epistatic SNP Association Analysis on Expanded Wellcome Trust Data by Lippert, Christoph, Listgarten, Jennifer, Davidson, Robert I., Baxter, Jeff, Poon, Hoifung, Kadie, Carl M., Heckerman, David

“…We present an approach for genome-wide association analysis with improved power on the Wellcome Trust data consisting of seven common phenotypes and shared…”
Get full text

Reduced replication capacity of NL4-3 recombinant viruses encoding RT-Integrase sequences from HIV-1 elite controllers by Brumme, Zabrina L., Li, Chun, Miura, Toshiyuki, Sela, Jennifer, Rosato, Pamela C., Brumme, Chanson J., Markle, Tristan J., Martin, Eric, Block, Brian L., Trocha, Alicja, Kadie, Carl M., Allen, Todd M., Pereyra, Florencia, Heckerman, David, Walker, Bruce D., Brockman, Mark A.

Get full text

A powerful and efficient set test for genetic markers that handles confounders by Listgarten, Jennifer, Lippert, Christoph, Kang, Eun Yong, Xiang, Jing, Kadie, Carl M, Heckerman, David

“…Approaches for testing sets of variants, such as a set of rare or common variants within a gene or pathway, for association with complex traits are important…”
Get full text

Book reviews by Fruehwirth, Thom, Dartnall, Terry, Button, Charles G., Shillcock, Richard, Kalus, Tony, Kadie, Carl M., Twidale, Michael, Eliasz, Andrew, Brown, Gordon D. A.

Get full text