Search Results - "Kabra, Ashish"
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Unveiling the Druggable Landscape of Bacterial Peptidyl tRNA Hydrolase: Insights into Structure, Function, and Therapeutic Potential
Published in Biomolecules (Basel, Switzerland) (01-06-2024)“…Bacterial peptidyl tRNA hydrolase (Pth) or Pth1 emerges as a pivotal enzyme involved in the maintenance of cellular homeostasis by catalyzing the release of…”
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Observation of Arginine Side-Chain Motions Coupled to the Global Conformational Exchange Process in Deubiquitinase A
Published in ACS omega (22-03-2022)“…Coupled motions have been demonstrated to be functionally important in a number of enzymes. Noncovalent side-chain interactions play essential roles in…”
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Unraveling the stereochemical and dynamic aspects of the catalytic site of bacterial peptidyl-tRNA hydrolase
Published in RNA (Cambridge) (01-02-2017)“…Bacterial peptidyl-tRNA hydrolase (Pth; EC 3.1.1.29) hydrolyzes the peptidyl-tRNAs accumulated in the cytoplasm and thereby prevents cell death by alleviating…”
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THE USE OF CAROTID INTIMAL MEDIA THICKNESS IN THE PREDICTION OF STEMI
Published in Journal of the American College of Cardiology (12-03-2013)“…Background Patients who present with ST elevation myocardial infarction (STEMI) typically have fewer traditional risk factors vs. patients with other forms of…”
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Structural characterization of peptidyl-tRNA hydrolase from Mycobacterium smegmatis by NMR spectroscopy
Published in Biochimica et biophysica acta (01-10-2016)“…Accumulation of toxic peptidyl-tRNAs in the bacterial cytoplasm is averted by the action of peptidyl-tRNA hydrolase (Pth), which cleaves peptidyl-tRNA into…”
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The Intrinsically Disordered Proteins MLLT3 (AF9) and MLLT1 (ENL) – Multimodal Transcriptional Switches With Roles in Normal Hematopoiesis, MLL Fusion Leukemia, and Kidney Cancer
Published in Journal of molecular biology (15-01-2022)“…[Display omitted] •MLLT3 and MLLT1 drive protein-protein interactions via coupled binding and folding.•Fusion proteins (MLL-AF9 and MLL-ENL) with MLL are…”
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Bike-Share Systems: Accessibility and Availability
Published in Management science (01-09-2020)“…The cities of Paris, London, Chicago, and New York (among many others) have set up bike-share systems to facilitate the use of bicycles for urban commuting…”
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Conformational Dynamics of Deubiquitinase A and Functional Implications
Published in Biochemistry (Easton) (26-01-2021)“…Deubiquitinase A (DUBA) belongs to the ovarian tumor family of deubiquitinating enzymes and was initially identified as a negative regulator of type I…”
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Online Grocery Retail: Revenue Models and Environmental Impact
Published in Management science (01-06-2017)“…This paper compares the financial and environmental performance of two revenue models for the online retailing of groceries: the per-order model, where…”
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Functional Dynamics of Deubiquitinase A
Published in The FASEB journal (01-05-2022)“…Deubiquitinase A (DUBA) is an isopeptidase that cleaves K63‐linked and K48‐linked ubiquitin chains from substrate proteins. DUBA belongs to the ovarian tumor…”
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Abstract 1995: Functional Roles of Conformational Dynamics in Deubiquitinating Enzymes
Published in The Journal of biological chemistry (2023)Get full text
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Modulation of conformational equilibrium by phosphorylation underlies the activation of deubiquitinase A
Published in The Journal of biological chemistry (20-03-2020)“…Deubiquitinases deconjugate ubiquitin modifications from target proteins and are involved in many cellular processes in eukaryotes. The functions of…”
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Recombinant expression and purification of human EP300-KIX87 domain from Escherichia coli
Published in Bio-protocol (2024)Get full text
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Role of methionine 71 in substrate recognition and structural integrity of bacterial peptidyl-tRNA hydrolase
Published in Biochimica et biophysica acta. Proteins and proteomics (01-08-2018)“…Bacterial peptidyl-tRNA hydrolase (Pth) is an essential enzyme that alleviates tRNA starvation by recycling prematurely dissociated peptidyl-tRNAs. The…”
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Small-Molecule Inhibitors of the MLL1 CXXC Domain, an Epigenetic Reader of DNA Methylation
Published in ACS medicinal chemistry letters (11-08-2022)“…The CXXC domain is a reader of DNA methylation which preferentially binds to unmethylated CpG DNA motifs. Chromosomal translocations involving the MLL1 gene…”
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Backbone 1 H, 13 C, and 15 N resonance assignments of deubiquitinase A in non-phosphorylated and phosphorylated forms
Published in Biomolecular NMR assignments (01-04-2019)“…Ubiquitination is one of the most prevalent forms of post-translational modifications that are important for regulating many cellular processes in eukaryotes…”
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Essays on New Business Models in Smart Transportation and Deli
Published 01-01-2018“…The public and private sector are developing technology enabled disruptive business models for transportation and delivery. They aim to address growing…”
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Dissertation -
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Backbone 1H, 13C, and 15N resonance assignments of deubiquitinase A in non-phosphorylated and phosphorylated forms
Published in Biomolecular NMR assignments (01-04-2019)“…Ubiquitination is one of the most prevalent forms of post-translational modifications that are important for regulating many cellular processes in eukaryotes…”
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Solution structures and dynamics of ADF/cofilins UNC-60A and UNC-60B from Caenorhabditis elegans
Published in Biochemical journal (01-01-2015)“…The nematode Caenorhabditis elegans has two ADF (actin-depolymerizing factor)/cofilin isoforms, UNC-60A and UNC-60B, which are expressed by the unc60 gene by…”
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KIX domain determines a selective tumor-promoting role for EP300 and its vulnerability in small cell lung cancer
Published in Science advances (18-02-2022)“…EP300, a transcription coactivator important in proliferation and differentiation, is frequently mutated in diverse cancer types, including small cell lung…”
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