Search Results - "KOSCHÜTZKI, Dirk"

Flux Balance Analysis of Barley Seeds: A Computational Approach to Study Systemic Properties of Central Metabolism by Grafahrend-Belau, Eva, Schreiber, Falk, Koschützki, Dirk, Junker, Björn H

“…The accumulation of storage compounds is an important aspect of cereal seed metabolism. Due to the agronomical importance of the storage reserves of starch,…”
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Exploration of biological network centralities with CentiBiN by Junker, Björn H, Koschützki, Dirk, Schreiber, Falk

“…The elucidation of whole-cell regulatory, metabolic, interaction and other biological networks generates the need for a meaningful ranking of network elements…”
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CentiLib: comprehensive analysis and exploration of network centralities by GRASSLER, Johannes, KOSCHÜTZKI, Dirk, SCHREIBER, Falk

“…CentiLib is a library and plug-in for the comprehensive analysis and exploration of network centralities. It provides 17 different node centrality and four…”
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Meta-All: a system for managing metabolic pathway information by Weise, Stephan, Grosse, Ivo, Klukas, Christian, Koschützki, Dirk, Scholz, Uwe, Schreiber, Falk, Junker, Björn H

“…Many attempts are being made to understand biological subjects at a systems level. A major resource for these approaches are biological databases, storing…”
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Centrality Analysis Methods for Biological Networks and Their Application to Gene Regulatory Networks by Koschützki, Dirk, Schreiber, Falk

“…Dirk Koschützki1,2 and Falk Schreiber1,3 1Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3,…”
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Community-based Linking of Biological Network Resources: Databases, Formats and Tools by Telgkamp, Michael, Koschützki, Dirk, Schwöbbermeyer, Henning, Schreiber, Falk

“…The analysis of biological networks is increasingly important in the life sciences and in particular in systems biology. Computer-based analysis tools are…”
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2.5D Visualisation of Overlapping Biological Networks by Fung, David C.Y., Hong, Seok-Hee, Koschützki, Dirk, Schreiber, Falk, Xu, Kai

“…Biological data is often structured in the form of complex interconnected networks such as protein interaction and metabolic networks. In this paper, we…”
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2.5D Visualisation of Overlapping Biological Networks by Fung, David C.Y., Hong, Seok-Hee, Koschützki, Dirk, Schreiber, Falk, Xu, Kai

“…Biological data is often structured in the form of complex interconnected networks such as protein interaction and metabolic networks. In this paper, we…”
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Kinetic Modelling with the Systems Biology Modelling Environment SyBME by Junker, Björn H., Koschützki, Dirk, Schreiber, Falk

“…Kinetic modelling and simulation is an important approach in systems biology. While the focus of current modelling tools is on simulation, model development is…”
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Kinetic Modelling with the Systems Biology Modelling Environment SyBME by Junker, Björn H., Koschützki, Dirk, Schreiber, Falk

“…Kinetic modelling and simulation is an important approach in systems biology. While the focus of current modelling tools is on simulation, model development is…”
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How to identify essential genes from molecular networks? by del Rio, Gabriel, Koschützki, Dirk, Coello, Gerardo

“…The prediction of essential genes from molecular networks is a way to test the understanding of essentiality in the context of what is known about the network…”
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Ranking of network elements based on functional substructures by Koschützki, Dirk, Schwöbbermeyer, Henning, Schreiber, Falk

“…Centrality analysis has been shown to be a valuable method for the structural analysis of biological networks. It is used to identify key elements within…”
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MetaCrop: a detailed database of crop plant metabolism by Grafahrend-Belau, Eva, Weise, Stephan, Koschützki, Dirk, Scholz, Uwe, Junker, Björn H, Schreiber, Falk

“…MetaCrop is a manually curated repository of high quality information concerning the metabolism of crop plants. This includes pathway diagrams, reactions,…”
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Structural analysis of metabolic networks based on flux centrality by Koschützki, Dirk, Junker, Björn H., Schwender, Jörg, Schreiber, Falk

“…Metabolic reactions are fundamental to living organisms, and a large number of reactions simultaneously occur at a given time in living cells transforming…”
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Flux Balance Analysis of Barley Seeds: A Computational Approach to Study Systemic Properties of Central Metabolism1[W] by Grafahrend-Belau, Eva, Schreiber, Falk, Koschützki, Dirk, Junker, Björn H

“…The accumulation of storage compounds is an important aspect of cereal seed metabolism. Due to the agronomical importance of the storage reserves of starch,…”
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Graph Pattern Analysis with PatternGravisto by Klukas, Christian, Koschützki, Dirk, Schreiber, Falk

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Community-based Linking of Biological Network Resources: Databases, Formats and Tools by Telgkamp, Michael, Koschützki, Dirk, Schwöbbermeyer, Henning, Schreiber, Falk

“…The analysis of biological networks is increasingly important in the life sciences and in particular in systems biology. Computer-based analysis tools are…”
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Visual Analysis of Overlapping Biological Networks by Fung, D.C.Y., Seok-Hee Hong, Koschutzki, D., Schreiber, F., Kai Xu

“…This paper investigates a new problem of visualizing a set of overlapping networks. We present two methods for constructing visualization of two and three…”
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