Search Results - "KOHARA, Yuji"

Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions by Kajitani, Rei, Yoshimura, Dai, Okuno, Miki, Minakuchi, Yohei, Kagoshima, Hiroshi, Fujiyama, Asao, Kubokawa, Kaoru, Kohara, Yuji, Toyoda, Atsushi, Itoh, Takehiko

“…The ultimate goal for diploid genome determination is to completely decode homologous chromosomes independently, and several phasing programs from consensus…”
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Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates by Nakatani, Yoichiro, Takeda, Hiroyuki, Kohara, Yuji, Morishita, Shinichi

“…Although several vertebrate genomes have been sequenced, little is known about the genome evolution of early vertebrates and how large-scale genomic changes…”
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A small RNA system ensures accurate homologous pairing and unpaired silencing of meiotic chromosomes by Tabara, Hiroaki, Mitani, Shohei, Mochizuki, Megumi, Kohara, Yuji, Nagata, Kyosuke

“…During meiosis, chromosomes with homologous partners undergo synaptonemal complex (SC)‐mediated pairing, while the remaining unpaired chromosomes are…”
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Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads by Kajitani, Rei, Toshimoto, Kouta, Noguchi, Hideki, Toyoda, Atsushi, Ogura, Yoshitoshi, Okuno, Miki, Yabana, Mitsuru, Harada, Masayuki, Nagayasu, Eiji, Maruyama, Haruhiko, Kohara, Yuji, Fujiyama, Asao, Hayashi, Tetsuya, Itoh, Takehiko

“…Although many de novo genome assembly projects have recently been conducted using high-throughput sequencers, assembling highly heterozygous diploid genomes is…”
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Co-option of Sox3 as the male-determining factor on the Y chromosome in the fish Oryzias dancena by Takehana, Yusuke, Matsuda, Masaru, Myosho, Taijun, Suster, Maximiliano L., Kawakami, Koichi, Shin-I, Tadasu, Kohara, Yuji, Kuroki, Yoko, Toyoda, Atsushi, Fujiyama, Asao, Hamaguchi, Satoshi, Sakaizumi, Mitsuru, Naruse, Kiyoshi

“…Sex chromosomes harbour a primary sex-determining signal that triggers sexual development of the organism. However, diverse sex chromosome systems have been…”
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Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein by Hashimoto, Takuma, Horikawa, Daiki D., Saito, Yuki, Kuwahara, Hirokazu, Kozuka-Hata, Hiroko, Shin-I, Tadasu, Minakuchi, Yohei, Ohishi, Kazuko, Motoyama, Ayuko, Aizu, Tomoyuki, Enomoto, Atsushi, Kondo, Koyuki, Tanaka, Sae, Hara, Yuichiro, Koshikawa, Shigeyuki, Sagara, Hiroshi, Miura, Toru, Yokobori, Shin-ichi, Miyagawa, Kiyoshi, Suzuki, Yutaka, Kubo, Takeo, Oyama, Masaaki, Kohara, Yuji, Fujiyama, Asao, Arakawa, Kazuharu, Katayama, Toshiaki, Toyoda, Atsushi, Kunieda, Takekazu

“…Tardigrades, also known as water bears, are small aquatic animals. Some tardigrade species tolerate almost complete dehydration and exhibit extraordinary…”
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Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes by Watanabe, Toshiaki, Sasaki, Hiroyuki, Totoki, Yasushi, Toyoda, Atsushi, Kaneda, Masahiro, Kuramochi-Miyagawa, Satomi, Obata, Yayoi, Chiba, Hatsune, Kohara, Yuji, Kono, Tomohiro, Nakano, Toru, Surani, M. Azim, Sakaki, Yoshiyuki

“…RNA interference (RNAi) is a mechanism by which double-stranded RNAs (dsRNAs) suppress specific transcripts in a sequence-dependent manner. dsRNAs are…”
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A whole-mount in situ hybridization method for microRNA detection in Caenorhabditis elegans by Andachi, Yoshiki, Kohara, Yuji

“…Whole-mount in situ hybridization (WISH) is an outstanding method to decipher the spatiotemporal expression patterns of microRNAs (miRNAs) and provides…”
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Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse by Kato, Yuzuru, Kaneda, Masahiro, Hata, Kenichiro, Kumaki, Kenji, Hisano, Mizue, Kohara, Yuji, Okano, Masaki, Li, En, Nozaki, Masami, Sasaki, Hiroyuki

“…DNA methylation is an important epigenetic modification regulating various biological phenomena, including genomic imprinting and transposon silencing. It is…”
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Genome sequence and analysis of the Japanese morning glory Ipomoea nil by Hoshino, Atsushi, Jayakumar, Vasanthan, Nitasaka, Eiji, Toyoda, Atsushi, Noguchi, Hideki, Itoh, Takehiko, Shin-I, Tadasu, Minakuchi, Yohei, Koda, Yuki, Nagano, Atsushi J., Yasugi, Masaki, Honjo, Mie N., Kudoh, Hiroshi, Seki, Motoaki, Kamiya, Asako, Shiraki, Toshiyuki, Carninci, Piero, Asamizu, Erika, Nishide, Hiroyo, Tanaka, Sachiko, Park, Kyeung-Il, Morita, Yasumasa, Yokoyama, Kohei, Uchiyama, Ikuo, Tanaka, Yoshikazu, Tabata, Satoshi, Shinozaki, Kazuo, Hayashizaki, Yoshihide, Kohara, Yuji, Suzuki, Yutaka, Sugano, Sumio, Fujiyama, Asao, Iida, Shigeru, Sakakibara, Yasubumi

“…Ipomoea is the largest genus in the family Convolvulaceae. Ipomoea nil (Japanese morning glory) has been utilized as a model plant to study the genetic basis…”
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The amphioxus genome and the evolution of the chordate karyotype by Satoh, Nori, Rokhsar, Daniel S, Putnam, Nicholas H, Butts, Thomas, Ferrier, David E. K, Furlong, Rebecca F, Hellsten, Uffe, Kawashima, Takeshi, Robinson-Rechavi, Marc, Shoguchi, Eiichi, Terry, Astrid, Yu, Jr-Kai, Benito-Gutiérrez, E lia, Dubchak, Inna, Garcia-Fernàndez, Jordi, Gibson-Brown, Jeremy J, Grigoriev, Igor V, Horton, Amy C, de Jong, Pieter J, Jurka, Jerzy, Kapitonov, Vladimir V, Kohara, Yuji, Kuroki, Yoko, Lindquist, Erika, Lucas, Susan, Osoegawa, Kazutoyo, Pennacchio, Len A, Salamov, Asaf A, Satou, Yutaka, Sauka-Spengler, Tatjana, Schmutz, Jeremy, Shin-I, Tadasu, Toyoda, Atsushi, Bronner-Fraser, Marianne, Fujiyama, Asao, Holland, Linda Z, Holland, Peter W. H

“…Lancelets (‘amphioxus’) are the modern survivors of an ancient chordate lineage, with a fossil record dating back to the Cambrian period. Here we describe the…”
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Co-expression of the transcription factors CEH-14 and TTX-1 regulates AFD neuron-specific genes gcy-8 and gcy-18 in C. elegans by Kagoshima, Hiroshi, Kohara, Yuji

“…A wide variety of cells are generated by the expression of characteristic sets of genes, primarily those regulated by cell-specific transcription. To elucidate…”
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Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics by Aoki, Koh, Yano, Kentaro, Suzuki, Ayako, Kawamura, Shingo, Sakurai, Nozomu, Suda, Kunihiro, Kurabayashi, Atsushi, Suzuki, Tatsuya, Tsugane, Taneaki, Watanabe, Manabu, Ooga, Kazuhide, Torii, Maiko, Narita, Takanori, Shin-I, Tadasu, Kohara, Yuji, Yamamoto, Naoki, Takahashi, Hideki, Watanabe, Yuichiro, Egusa, Mayumi, Kodama, Motoichiro, Ichinose, Yuki, Kikuchi, Mari, Fukushima, Sumire, Okabe, Akiko, Arie, Tsutomu, Sato, Yuko, Yazawa, Katsumi, Satoh, Shinobu, Omura, Toshikazu, Ezura, Hiroshi, Shibata, Daisuke

“…The Solanaceae family includes several economically important vegetable crops. The tomato (Solanum lycopersicum) is regarded as a model plant of the Solanaceae…”
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Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction by Hiraki, Hideaki, Kagoshima, Hiroshi, Kraus, Christopher, Schiffer, Philipp H, Ueta, Yumiko, Kroiher, Michael, Schierenberg, Einhard, Kohara, Yuji

“…Sexual reproduction involving the fusion of egg and sperm is prevailing among eukaryotes. In contrast, the nematode Diploscapter coronatus, a close relative of…”
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Mutations in cell elongation genes mreB, mrdA and mrdB suppress the shape defect of RodZ‐deficient cells by Shiomi, Daisuke, Toyoda, Atsushi, Aizu, Tomoyuki, Ejima, Fumio, Fujiyama, Asao, Shini, Tadasu, Kohara, Yuji, Niki, Hironori

“…Summary RodZ interacts with MreB and both factors are required to maintain the rod shape of Escherichia coli. The assembly of MreB into filaments regulates the…”
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Large-scale analysis of gene function in Caenorhabditis elegans by high-throughput RNAi by Maeda, I, Kohara, Y, Yamamoto, M, Sugimoto, A

“…Genome-wide analysis of gene function is essential for the post-genome era, and development of efficient and economical technology suitable for it has been in…”
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The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains by Takada, Toyoyuki, Ebata, Toshinobu, Noguchi, Hideki, Keane, Thomas M, Adams, David J, Narita, Takanori, Shin-I, Tadasu, Fujisawa, Hironori, Toyoda, Atsushi, Abe, Kuniya, Obata, Yuichi, Sakaki, Yoshiyuki, Moriwaki, Kazuo, Fujiyama, Asao, Kohara, Yuji, Shiroishi, Toshihiko

“…Commonly used classical inbred mouse strains have mosaic genomes with sequences from different subspecific origins. Their genomes are derived predominantly…”
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Axial patterning in cephalochordates and the evolution of the organizer by Shin-I, Tadasu, Holland, Linda Z, Holland, Nicholas D, Kohara, Yuji, Satou, Yutaka, Bronner-Fraser, Marianne, Yu, Jr-Kai, Satoh, Noriyuki

“…The organizer of the vertebrate gastrula is an important signalling centre that induces and patterns dorsal axial structures. Although a topic of long-standing…”
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Identification of genes expressed in the hermaphrodite germ line of C. elegans using SAGE by Wang, Xin, Zhao, Yongjun, Wong, Kim, Ehlers, Peter, Kohara, Yuji, Jones, Steven J, Marra, Marco A, Holt, Robert A, Moerman, Donald G, Hansen, Dave

“…Germ cells must progress through elaborate developmental stages from an undifferentiated germ cell to a fully differentiated gamete. Some of these stages…”
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TLR-independent control of innate immunity in Caenorhabditis elegans by the TIR domain adaptor protein TIR-1, an ortholog of human SARM by Sabatier, Laurence, Guichou, Jean-François, Kohara, Yuji, Couillault, Carole, Ewbank, Jonathan J, Reboul, Jérôme, Pujol, Nathalie

“…Both plants and animals respond to infection by synthesizing compounds that directly inhibit or kill invading pathogens. We report here the identification of…”
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