Search Results - "KOCH, MARCUS A."

A Time-Calibrated Road Map of Brassicaceae Species Radiation and Evolutionary History by Hohmann, Nora, Wolf, Eva M., Lysak, Martin A., Koch, Marcus A.

“…The Brassicaceae include several major crop plants and numerous important model species in comparative evolutionary research such as Arabidopsis, Brassica,…”
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The Diverse Reticulate Genetic Set-Up of Endangered Gladiolus palustris in Southern Germany Has Consequences for the Development of Conservation Strategies by Koch, Marcus A.

“…Gladiolus palustris (marsh Gladiolus) of wet grasslands is an extremely rare and highly endangered species in Central Europe. Ongoing loss of habitat,…”
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Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution by Huang, Chien-Hsun, Sun, Renran, Hu, Yi, Zeng, Liping, Zhang, Ning, Cai, Liming, Zhang, Qiang, Koch, Marcus A, Al-Shehbaz, Ihsan, Edger, Patrick P, Pires, J Chris, Tan, Dun-Yan, Zhong, Yang, Ma, Hong

“…Brassicaceae is one of the most diverse and economically valuable angiosperm families with widely cultivated vegetable crops and scientifically important model…”
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world-wide perspective on crucifer speciation and evolution: phylogenetics, biogeography and trait evolution in tribe Arabideae by Karl, Robert, Koch, Marcus A

“…Background and AimsTribe Arabideae are the most species-rich monophyletic lineage in Brassicaceae. More than 500 species are distributed in the majority of…”
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Nested whole-genome duplications coincide with diversification and high morphological disparity in Brassicaceae by Walden, Nora, German, Dmitry A., Wolf, Eva M., Kiefer, Markus, Rigault, Philippe, Huang, Xiao-Chen, Kiefer, Christiane, Schmickl, Roswitha, Franzke, Andreas, Neuffer, Barbara, Mummenhoff, Klaus, Koch, Marcus A.

“…Angiosperms have become the dominant terrestrial plant group by diversifying for ~145 million years into a broad range of environments. During the course of…”
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An Arabidopsis introgression zone studied at high spatio-temporal resolution: interglacial and multiple genetic contact exemplified using whole nuclear and plastid genomes by Hohmann, Nora, Koch, Marcus A

“…Gene flow between species, across ploidal levels, and even between evolutionary lineages is a common phenomenon in the genus Arabidopsis. However, apart from…”
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Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data by Jiao, Wen-Biao, Accinelli, Gonzalo Garcia, Hartwig, Benjamin, Kiefer, Christiane, Baker, David, Severing, Edouard, Willing, Eva-Maria, Piednoel, Mathieu, Woetzel, Stefan, Madrid-Herrero, Eva, Huettel, Bruno, Hümann, Ulrike, Reinhard, Richard, Koch, Marcus A, Swan, Daniel, Clavijo, Bernardo, Coupland, George, Schneeberger, Korbinian

“…Long-read sequencing can overcome the weaknesses of short reads in the assembly of eukaryotic genomes; however, at present additional scaffolding is needed to…”
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Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism by Novikova, Polina Yu, Hohmann, Nora, Nizhynska, Viktoria, Tsuchimatsu, Takashi, Ali, Jamshaid, Muir, Graham, Guggisberg, Alessia, Paape, Tim, Schmid, Karl, Fedorenko, Olga M, Holm, Svante, Säll, Torbjörn, Schlötterer, Christian, Marhold, Karol, Widmer, Alex, Sese, Jun, Shimizu, Kentaro K, Weigel, Detlef, Krämer, Ute, Koch, Marcus A, Nordborg, Magnus

“…Magnus Nordborg and colleagues report a genomic analysis of all 27 known species in the genus Arabidopsis . They find evidence for a complex speciation history…”
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Cabbage family affairs: the evolutionary history of Brassicaceae by Franzke, Andreas, Lysak, Martin A., Al-Shehbaz, Ihsan A., Koch, Marcus A., Mummenhoff, Klaus

“…Life without the mustard family (Brassicaceae) would be a world without many crop species and the model organism Arabidopsis ( Arabidopsis thaliana) that has…”
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Arabidopsis hybrid speciation processes by Schmickl, Roswitha, Koch, Marcus A

“…The genus Arabidopsis provides a unique opportunity to study fundamental biological questions in plant sciences using the diploid model species Arabidopsis…”
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Impact of whole-genome duplications on structural variant evolution in Cochlearia by Hämälä, Tuomas, Moore, Christopher, Cowan, Laura, Carlile, Matthew, Gopaulchan, David, Brandrud, Marie K., Birkeland, Siri, Loose, Matthew, Kolář, Filip, Koch, Marcus A., Yant, Levi

“…Polyploidy, the result of whole-genome duplication (WGD), is a major driver of eukaryote evolution. Yet WGDs are hugely disruptive mutations, and we still lack…”
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BrassiBase: introduction to a novel knowledge database on Brassicaceae evolution by Kiefer, Markus, Schmickl, Roswitha, German, Dmitry A, Mandáková, Terezie, Lysak, Martin A, Al-Shehbaz, Ihsan A, Franzke, Andreas, Mummenhoff, Klaus, Stamatakis, Alexandros, Koch, Marcus A

“…The Brassicaceae family (mustards or crucifers) includes Arabidopsis thaliana as one of the most important model species in plant biology and a number of…”
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Comparison of glucosinolate diversity in the crucifer tribe Cardamineae and the remaining order Brassicales highlights repetitive evolutionary loss and gain of biosynthetic steps by Agerbirk, Niels, Hansen, Cecilie Cetti, Kiefer, Christiane, Hauser, Thure P., Ørgaard, Marian, Asmussen Lange, Conny Bruun, Cipollini, Don, Koch, Marcus A.

“…We review glucosinolate (GSL) diversity and analyze phylogeny in the crucifer tribe Cardamineae as well as selected species from Brassicaceae (tribe…”
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Taxonomy and systematics are key to biological information: Arabidopsis, Eutrema (Thellungiella), Noccaea and Schrenkiella (Brassicaceae) as examples by Koch, Marcus A, German, Dmitry A

“…Taxonomy and systematics provide the names and evolutionary framework for any biological study. Without these names there is no access to a biological context…”
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Chromosome triplication found across the tribe Brassiceae by Lysak, Martin A, Koch, Marcus A, Pecinka, Ales, Schubert, Ingo

“…We have used an approximately 8.7-Mb BAC contig of Arabidopsis thaliana Chromosome 4 to trace homeologous chromosome regions in 21 species of the family…”
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Parallel reduction in flowering time from de novo mutations enable evolutionary rescue in colonizing lineages by Fulgione, Andrea, Neto, Célia, Elfarargi, Ahmed F., Tergemina, Emmanuel, Ansari, Shifa, Göktay, Mehmet, Dinis, Herculano, Döring, Nina, Flood, Pádraic J., Rodriguez-Pacheco, Sofia, Walden, Nora, Koch, Marcus A., Roux, Fabrice, Hermisson, Joachim, Hancock, Angela M.

“…Understanding how populations adapt to abrupt environmental change is necessary to predict responses to future challenges, but identifying specific adaptive…”
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Ginkgo biloba's footprint of dynamic Pleistocene history dates back only 390,000 years ago by Hohmann, Nora, Wolf, Eva M, Rigault, Philippe, Zhou, Wenbin, Kiefer, Markus, Zhao, Yunpeng, Fu, Cheng-Xin, Koch, Marcus A

“…At the end of the Pliocene and the beginning of Pleistocene glaciation and deglaciation cycles Ginkgo biloba went extinct all over the world, and only few…”
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The Scaffold Tree − Visualization of the Scaffold Universe by Hierarchical Scaffold Classification by Schuffenhauer, Ansgar, Ertl, Peter, Roggo, Silvio, Wetzel, Stefan, Koch, Marcus A, Waldmann, Herbert

“…A hierarchical classification of chemical scaffolds (molecular framework, which is obtained by pruning all terminal side chains) has been introduced. The…”
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Evolution and genetic differentiation among relatives of Arabidopsis thaliana by Koch, Marcus A, Matschinger, Michaela

“…Arabidopsis thaliana is one of the most intensively studied plant species. More recently, information is accumulating about its closest relatives, the former…”
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Charting Biologically Relevant Chemical Space: A Structural Classification of Natural Products (SCONP) by Koch, Marcus A., Ansgar Schuffenhauer, Michael Scheck, Stefan Wetzel, Marco Casaulta, Odermatt, Alex, Peter Ertl, Waldmann, Herbert, Lerner, Richard A.

“…The identification of small molecules that fall within the biologically relevant subfraction of vast chemical space is of utmost importance to chemical biology…”
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