Search Results - "KÕLJALG, URMAS"

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications by Nilsson, Rolf Henrik, Larsson, Karl-Henrik, Taylor, Andy F S, Bengtsson-Palme, Johan, Jeppesen, Thomas S, Schigel, Dmitry, Kennedy, Peter, Picard, Kathryn, Glöckner, Frank Oliver, Tedersoo, Leho, Saar, Irja, Kõljalg, Urmas, Abarenkov, Kessy

“…Abstract UNITE (https://unite.ut.ee/) is a web-based database and sequence management environment for the molecular identification of fungi. It targets the…”
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Structure and function of the soil microbiome underlying N2O emissions from global wetlands by Bahram, Mohammad, Espenberg, Mikk, Pärn, Jaan, Lehtovirta-Morley, Laura, Anslan, Sten, Kasak, Kuno, Kõljalg, Urmas, Liira, Jaan, Maddison, Martin, Moora, Mari, Niinemets, Ülo, Öpik, Maarja, Pärtel, Meelis, Soosaar, Kaido, Zobel, Martin, Hildebrand, Falk, Tedersoo, Leho, Mander, Ülo

“…Wetland soils are the greatest source of nitrous oxide (N 2 O), a critical greenhouse gas and ozone depleter released by microbes. Yet, microbial players and…”
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Regional and local patterns of ectomycorrhizal fungal diversity and community structure along an altitudinal gradient in the Hyrcanian forests of northern Iran by Bahram, Mohammad, Polme, Sergei, Koljalg, Urmas, Zarre, Shahin, Tedersoo, Leho

“…Altitudinal gradients strongly affect the diversity of plants and animals, yet little is known about the altitudinal effects on the distribution of…”
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Fungal community analysis by high-throughput sequencing of amplified markers – a user's guide by Lindahl, Björn D., Nilsson, R. Henrik, Tedersoo, Leho, Abarenkov, Kessy, Carlsen, Tor, Kjøller, Rasmus, Kõljalg, Urmas, Pennanen, Taina, Rosendahl, Søren, Stenlid, Jan, Kauserud, Håvard

“…Novel high-throughput sequencing methods outperform earlier approaches in terms of resolution and magnitude. They enable identification and relative…”
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454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases by Tedersoo, Leho, Nilsson, R. Henrik, Abarenkov, Kessy, Jairus, Teele, Sadam, Ave, Saar, Irja, Bahram, Mohammad, Bechem, Eneke, Chuyong, George, Kõljalg, Urmas

“…Compared with Sanger sequencing-based methods, pyrosequencing provides orders of magnitude more data on the diversity of organisms in their natural habitat,…”
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High-level classification of the Fungi and a tool for evolutionary ecological analyses by Tedersoo, Leho, Sánchez-Ramírez, Santiago, Kõljalg, Urmas, Bahram, Mohammad, Döring, Markus, Schigel, Dmitry, May, Tom, Ryberg, Martin, Abarenkov, Kessy

“…High-throughput sequencing studies generate vast amounts of taxonomic data. Evolutionary ecological hypotheses of the recovered taxa and Species Hypotheses are…”
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Identifying the ‘unidentified’ fungi: a global-scale long-read third-generation sequencing approach by Tedersoo, Leho, Anslan, Sten, Bahram, Mohammad, Kõljalg, Urmas, Abarenkov, Kessy

“…Molecular identification methods, in particular high-throughput sequencing tools, have greatly improved our knowledge about fungal diversity and biogeography,…”
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Temporal patterns of orchid mycorrhizal fungi in meadows and forests as revealed by 454 pyrosequencing by Oja, Jane, Kohout, Petr, Tedersoo, Leho, Kull, Tiiu, Kõljalg, Urmas

“…Orchid mycorrhizal (OrM) symbionts play a key role in the growth of orchids, but the temporal variation and habitat partitioning of these fungi in roots and…”
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DNA barcoding of fungal specimens using PacBio long‐read high‐throughput sequencing by Runnel, Kadri, Abarenkov, Kessy, Copoț, Ovidiu, Mikryukov, Vladimir, Kõljalg, Urmas, Saar, Irja, Tedersoo, Leho

“…Molecular methods are increasingly used to identify species that lack conspicuous macro‐ or micromorphological characters. Taxonomic and ecological research…”
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Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe by Tedersoo, Leho, Anslan, Sten, Bahram, Mohammad, Drenkhan, Rein, Pritsch, Karin, Buegger, Franz, Padari, Allar, Hagh-Doust, Niloufar, Mikryukov, Vladimir, Gohar, Daniyal, Amiri, Rasekh, Hiiesalu, Indrek, Lutter, Reimo, Rosenvald, Raul, Rähn, Elisabeth, Adamson, Kalev, Drenkhan, Tiia, Tullus, Hardi, Jürimaa, Katrin, Sibul, Ivar, Otsing, Eveli, Põlme, Sergei, Metslaid, Marek, Loit, Kaire, Agan, Ahto, Puusepp, Rasmus, Varik, Inge, Kõljalg, Urmas, Abarenkov, Kessy

“…Soil microbiome has a pivotal role in ecosystem functioning, yet little is known about its build-up from local to regional scales. In a multi-year…”
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Towards global patterns in the diversity and community structure of ectomycorrhizal fungi by TEDERSOO, LEHO, BAHRAM, MOHAMMAD, TOOTS, MÄRT, DIÉDHIOU, ABDALA G., HENKEL, TERRY W., KJØLLER, RASMUS, MORRIS, MELISSA H., NARA, KAZUHIDE, NOUHRA, EDUARDO, PEAY, KABIR G., PÕLME, SERGEI, RYBERG, MARTIN, SMITH, MATTHEW E., KÕLJALG, URMAS

“…Global species richness patterns of soil micro‐organisms remain poorly understood compared to macro‐organisms. We use a global analysis to disentangle the…”
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Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers by Tedersoo, Leho, Jairus, Teele, Horton, Bryony M., Abarenkov, Kessy, Suvi, Triin, Saar, Irja, Kõljalg, Urmas

“…Ectomycorrhizal (ECM) symbiosis is a widespread plant nutrition strategy in Australia, especially in semiarid regions. This study aims to determine the…”
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The UNITE database for molecular identification of fungi – recent updates and future perspectives by Abarenkov, Kessy, Nilsson, R. Henrik, Larsson, Karl-Henrik, Alexander, Ian J., Eberhardt, Ursula, Erland, Susanne, Høiland, Klaus, Kjøller, Rasmus, Larsson, Ellen, Pennanen, Taina, Sen, Robin, Taylor, Andy F. S., Tedersoo, Leho, Ursing, Björn M., Vrålstad, Trude, Liimatainen, Kare, Peintner, Ursula, Kõljalg, Urmas

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Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective by Nilsson, R Henrik, Ryberg, Martin, Kristiansson, Erik, Abarenkov, Kessy, Larsson, Karl-Henrik, Kõljalg, Urmas

“…DNA sequences are increasingly seen as one of the primary information sources for species identification in many organism groups. Such approaches, popularly…”
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Biogeography of ectomycorrhizal fungi associated with alders (Alnus spp.) in relation to biotic and abiotic variables at the global scale by Põlme, Sergei, Bahram, Mohammad, Yamanaka, Takashi, Nara, Kazuhide, Dai, Yu Cheng, Grebenc, Tine, Kraigher, Hojka, Toivonen, Mika, Wang, Pi‐Han, Matsuda, Yosuke, Naadel, Triin, Kennedy, Peter G., Kõljalg, Urmas, Tedersoo, Leho

“…Much of the macroecological information about microorganisms is confounded by the lack of standardized methodology, paucity of metadata and sampling effect of…”
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Global diversity and geography of soil fungi by Tedersoo, Leho, Bahram, Mohammad, Põlme, Sergei, Kõljalg, Urmas, Yorou, Nourou S., Wijesundera, Ravi, Ruiz, Luis Villarreal, Vasco-Palacios, Aída M., Thu, Pham Quang, Suija, Ave, Smith, Matthew E., Sharp, Cathy, Saluveer, Erki, Saitta, Alessandro, Rosas, Miguel, Riit, Taavi, Ratkowsky, David, Pritsch, Karin, Põldmaa, Kadri, Piepenbring, Meike, Phosri, Cherdchai, Peterson, Marko, Parts, Kaarin, Pärtel, Kadri, Otsing, Eveli, Nouhra, Eduardo, Njouonkou, André L., Nilsson, R. Henrik, Morgado, Luis N., Mayor, Jordan, May, Tom W., Majuakim, Luiza, Lodge, D. Jean, Lee, Su See, Larsson, Karl-Henrik, Kohout, Petr, Hosaka, Kentaro, Hiiesalu, Indrek, Henkel, Terry W., Harend, Helery, Guo, Liang-dong, Greslebin, Alina, Grelet, Gwen, Geml, Jozsef, Gates, Genevieve, Dunstan, William, Dunk, Chris, Drenkhan, Rein, Dearnaley, John, De Kesel, André, Dang, Tan, Chen, Xin, Buegger, Franz, Brearley, Francis Q., Bonito, Gregory, Anslan, Sten, Abell, Sandra, Abarenkov, Kessy

“…Fungi play major roles in ecosystem processes, but the determinants of fungal diversity and biogeographic patterns remain poorly understood. Using DNA…”
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Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi by Tedersoo, Leho, Anslan, Sten, Bahram, Mohammad, Põlme, Sergei, Riit, Taavi, Liiv, Ingrid, Kõljalg, Urmas, Kisand, Veljo, Nilsson, Henrik, Hildebrand, Falk, Bork, Peer, Abarenkov, Kessy

“…Rapid development of high-throughput (HTS) molecular identification methods has revolutionized our knowledge about taxonomic diversity and ecology of fungi…”
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Enzymatic activities and stable isotope patterns of ectomycorrhizal fungi in relation to phylogeny and exploration types in an afrotropical rain forest by Tedersoo, Leho, Naadel, Triin, Bahram, Mohammad, Pritsch, Karin, Buegger, Franz, Leal, Miguel, Kõljalg, Urmas, Põldmaa, Kadri

“…• Ectomycorrhizal (ECM) fungi obtain both mineral and simple organic nutrients from soil and transport these to plant roots. Natural abundance of stable…”
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Global biogeography of the ectomycorrhizal /sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetic analyses by Tedersoo, Leho, Bahram, Mohammad, Ryberg, Martin, Otsing, Eveli, Kõljalg, Urmas, Abarenkov, Kessy

“…Compared with plants and animals, large‐scale biogeographic patterns of microbes including fungi are poorly understood. By the use of a comparative…”
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Global biogeography of Alnus‐associated Frankia actinobacteria by Põlme, Sergei, Bahram, Mohammad, Kõljalg, Urmas, Tedersoo, Leho

“…Macroecological patterns of microbes have received relatively little attention until recently. This study aimed to disentangle the determinants of the global…”
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