Search Results - "Joseph, Tyler A."

FEAST: fast expectation-maximization for microbial source tracking by Shenhav, Liat, Thompson, Mike, Joseph, Tyler A., Briscoe, Leah, Furman, Ori, Bogumil, David, Mizrahi, Itzhak, Pe’er, Itsik, Halperin, Eran

“…A major challenge of analyzing the compositional structure of microbiome data is identifying its potential origins. Here, we introduce fast…”
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Inference of Population Structure from Time-Series Genotype Data by Joseph, Tyler A., Pe’er, Itsik

“…Sequencing ancient DNA can offer direct probing of population history. Yet, such data are commonly analyzed with standard tools that assume DNA samples are all…”
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Compositional Lotka-Volterra describes microbial dynamics in the simplex by Joseph, Tyler A, Shenhav, Liat, Xavier, Joao B, Halperin, Eran, Pe'er, Itsik

“…Dynamic changes in microbial communities play an important role in human health and disease. Specifically, deciphering how microbial species in a community…”
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Comparative Population Genomics of African Montane Forest Mammals Support Population Persistence across a Climatic Gradient and Quaternary Climatic Cycles by Demos, Terrence C, Kerbis Peterhans, Julian C, Joseph, Tyler A, Robinson, John D, Agwanda, Bernard, Hickerson, Michael J

“…The Eastern Afromontane biodiversity hotspot (EABH) has the highest concentration of biodiversity in tropical Africa, yet few studies have investigated recent…”
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Directional Gaussian Mixture Models of the Gut Microbiome Elucidate Microbial Spatial Structure by Pasarkar, Amey P, Joseph, Tyler A, Pe'er, Itsik

“…The gut microbiome is spatially heterogeneous, with environmental niches contributing to the distribution and composition of microbial populations. A recently…”
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Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reveals personalized growth rates by Joseph, Tyler A, Chlenski, Philippe, Litman, Aviya, Korem, Tal, Pe'er, Itsik

“…Patterns of sequencing coverage along a bacterial genome-summarized by a peak-to-trough ratio (PTR)-have been shown to accurately reflect microbial growth…”
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An Introduction to Whole-Metagenome Shotgun Sequencing Studies by Joseph, Tyler A, Pe'er, Itsik

“…Microbial communities are found across diverse environments, including within and across the human body. As many microbes are unculturable in the lab, much of…”
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Genetic history from the Middle Neolithic to present on the Mediterranean island of Sardinia by Marcus, Joseph H., Posth, Cosimo, Ringbauer, Harald, Lai, Luca, Skeates, Robin, Sidore, Carlo, Beckett, Jessica, Furtwängler, Anja, Olivieri, Anna, Chiang, Charleston W. K., Al-Asadi, Hussein, Dey, Kushal, Joseph, Tyler A., Liu, Chi-Chun, Der Sarkissian, Clio, Radzevičiūtė, Rita, Michel, Megan, Gradoli, Maria Giuseppina, Marongiu, Patrizia, Rubino, Salvatore, Mazzarello, Vittorio, Rovina, Daniela, La Fragola, Alessandra, Serra, Rita Maria, Bandiera, Pasquale, Bianucci, Raffaella, Pompianu, Elisa, Murgia, Clizia, Guirguis, Michele, Orquin, Rosana Pla, Tuross, Noreen, van Dommelen, Peter, Haak, Wolfgang, Reich, David, Schlessinger, David, Cucca, Francesco, Krause, Johannes, Novembre, John

“…The island of Sardinia has been of particular interest to geneticists for decades. The current model for Sardinia’s genetic history describes the island as…”
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Survey of Ranavirus and Batrachochytrium dendrobatidis in Introduced Frogs in Hawaii, USA by Goodman, Rachel M, Tyler, Joseph A, Reinartz, Dakota M, Wright, Amber N

“…Ranaviruses and the fungus Batrachochytrium dendrobatidis are globally important agents of emerging infectious amphibian diseases. Amphibians on Oahu, the…”
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Methods for Modeling the Dynamics of Microbial Communities by Joseph, Tyler A

“…Advances in DNA sequencing of microbial communities have revealed a complex relationship between the human microbiome and our health. Community dynamics,…”
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Comparative Population Genomics of African Montane Forest Mammals Support Population Persistence across a Climatic Gradient and Quaternary Climatic Cycles: e0131800 by Demos, Terrence C, Peterhans, Julian CKerbis, Joseph, Tyler A, Robinson, John D, Agwanda, Bernard, Hickerson, Michael J

“…The Eastern Afromontane biodiversity hotspot (EABH) has the highest concentration of biodiversity in tropical Africa, yet few studies have investigated recent…”
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