Search Results - "José F. Cobo-Díaz"

Bacterial inoculation of Quercus pyrenaica trees alters co‐occurrence patterns but not the composition of the rhizosphere bacteriome in wild conditions by Lasa, Ana V., Fernández‐González, Antonio J., Villadas, Pablo J., Cobo‐Díaz, José F., Fernández‐López, M.

“…Quercus pyrenaica is a woody species of high landscape value, however, its forests show an advanced state of degradation in the Iberian Peninsula…”
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Whole Resistome Analysis in Campylobacter jejuni and C. coli Genomes Available in Public Repositories by Cobo-Díaz, José F., González del Río, Paloma, Álvarez-Ordóñez, Avelino

“…Campylobacter spp. are the most frequent agent of human gastroenteritis worldwide, and the spread of multidrug-resistant strains makes the clinical treatment…”
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High-throughput sequencing reveals genetic determinants associated with antibiotic resistance in Campylobacter spp. from farm-to-fork by Mouftah, Shaimaa F, Cobo-Díaz, José F, Álvarez-Ordóñez, Avelino, Elserafy, Menattallah, Saif, Nehal A, Sadat, Asmaa, El-Shibiny, Ayman, Elhadidy, Mohamed

“…Campylobacter species are one of the most common causative agents of gastroenteritis worldwide. Resistance against quinolone and macrolide antimicrobials, the…”
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The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils by Fernández-González, Antonio J., Martínez-Hidalgo, Pilar, Cobo-Díaz, José F., Villadas, Pablo J., Martínez-Molina, Eustoquio, Toro, Nicolás, Tringe, Susannah G., Fernández-López, Manuel

“…After a forest wildfire, the microbial communities have a transient alteration in their composition. The role of the soil microbial community in the recovery…”
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A pilot study revealing host‐associated genetic signatures for source attribution of sporadic Campylobacter jejuni infection in Egypt by Saif, Nehal A., Cobo‐Díaz, José F., Elserafy, Menattallah, El‐Shiekh, Iman, Álvarez‐Ordóñez, Avelino, Mouftah, Shaimaa F., Elhadidy, Mohamed

“…Campylobacter jejuni (C. jejuni), is considered among the most common bacterial causes of human bacterial gastroenteritis worldwide. The epidemiology and the…”
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Microbial colonization and resistome dynamics in food processing environments of a newly opened pork cutting industry during 1.5 years of activity by Cobo-Díaz, José F., Alvarez-Molina, Adrián, Alexa, Elena A., Walsh, Calum J., Mencía-Ares, Oscar, Puente-Gómez, Paula, Likotrafiti, Eleni, Fernández-Gómez, Paula, Prieto, Bernardo, Crispie, Fiona, Ruiz, Lorena, González-Raurich, Montserrat, López, Mercedes, Prieto, Miguel, Cotter, Paul, Alvarez-Ordóñez, Avelino

“…Background The microorganisms that inhabit food processing environments (FPE) can strongly influence the associated food quality and safety. In particular, the…”
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The resistome of the food chain: A One Health perspective by Fernández‐Trapote, Elena, Oliveira, Marcia, Cobo‐Díaz, José F., Alvarez‐Ordóñez, Avelino

“…Antimicrobial resistance (AMR) represents a significant global health problem which challenges Sustainable Development Goal 3 of the United Nations, with…”
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In-depth characterization of food and environmental microbiomes across different meat processing plants by Barcenilla, Coral, Cobo-Díaz, José F, Puente, Alba, Valentino, Vincenzo, De Filippis, Francesca, Ercolini, Danilo, Carlino, Niccolò, Pinto, Federica, Segata, Nicola, Prieto, Miguel, López, Mercedes, Alvarez-Ordóñez, Avelino

“…Processing environments can be an important source of pathogenic and spoilage microorganisms that cross contaminate meat and meat products. The aim of this…”
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The detailed analysis of the microbiome and resistome of artisanal blue-veined cheeses provides evidence on sources and patterns of succession linked with quality and safety traits by Alexa, Elena A, Cobo-Díaz, José F, Renes, Erica, O Callaghan, Tom F, Kilcawley, Kieran, Mannion, David, Skibinska, Iwona, Ruiz, Lorena, Margolles, Abelardo, Fernández-Gómez, Paula, Alvarez-Molina, Adrián, Puente-Gómez, Paula, Crispie, Fiona, López, Mercedes, Prieto, Miguel, Cotter, Paul D, Alvarez-Ordóñez, Avelino

“…Artisanal cheeses usually contain a highly diverse microbial community which can significantly impact their quality and safety. Here, we describe a detailed…”
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Long-Term Persistence of Three Microbial Wildfire Biomarkers in Forest Soils by Antonio J. Fernández-González, Ana V. Lasa, José F. Cobo-Díaz, Pablo J. Villadas, Antonio J. Pérez-Luque, Fernando M. García-Rodríguez, Susannah G. Tringe, Manuel Fernández-López

“…Long-term monitoring of microbial communities in the rhizosphere of post-fire forests is currently one of the key knowledge gaps. Knowing the time scale of the…”
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Inter-facility characterization of bacteria in seafood processing plants: Exploring potential reservoirs of spoilage organisms and the resistome by Corral-Jara, Karla Fabiola, Skírnisdóttir, Sigurlaug, Knobloch, Stephen, Briem, Helgi, Cobo-Díaz, José F., Carlino, Niccolò, Bergsten, Pauline, Armanini, Federica, Asnicar, Francesco, Pinto, Federica, Alvarez-Ordóñez, Avelino, Segata, Nicola, Marteinsson, Viggó þór

“…A study was conducted in fish processing facilities to investigate the microbial composition, microbial metabolic potential, and distribution of antibiotic…”
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Microbiome mapping in dairy industry reveals new species and genes for probiotic and bioprotective activities by De Filippis, Francesca, Valentino, Vincenzo, Yap, Min, Cabrera-Rubio, Raul, Barcenilla, Coral, Carlino, Niccolò, Cobo-Díaz, José F., Quijada, Narciso Martín, Calvete-Torre, Inés, Ruas-Madiedo, Patricia, Sabater, Carlos, Sequino, Giuseppina, Pasolli, Edoardo, Wagner, Martin, Margolles, Abelardo, Segata, Nicola, Álvarez-Ordóñez, Avelino, Cotter, Paul D., Ercolini, Danilo

“…The resident microbiome in food industries may impact on food quality and safety. In particular, microbes residing on surfaces in dairy industries may actively…”
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Metagenomic comparison of the faecal and environmental resistome on Irish commercial pig farms with and without zinc oxide and antimicrobial usage by Ekhlas, Daniel, Cobo Díaz, José F, Cabrera-Rubio, Raúl, Alexa, Elena, Ortiz Sanjuán, Juan M, Garcia Manzanilla, Edgar, Crispie, Fiona, Cotter, Paul D, Leonard, Finola C, Argüello, Héctor, Burgess, Catherine M

“…Antimicrobials and heavy metals such as zinc oxide (ZnO) have been commonly used on Irish commercial pig farms for a 2-week period post-weaning to help prevent…”
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Evidence of virulence and antibiotic resistance genes from the microbiome mapping in minimally processed vegetables producing facilities by Valentino, Vincenzo, Sequino, Giuseppina, Cobo-Díaz, José F., Álvarez-Ordóñez, Avelino, De Filippis, Francesca, Ercolini, Danilo

“…[Display omitted] •Sanitized food contact surfaces host several antibiotic resistance and biofilm genes.•Several potentially hazardous microbes might overcome…”
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Unraveling the emergence and population diversity of Listeria monocytogenes in a newly built meat facility through whole genome sequencing by Alvarez-Molina, Adrián, Cobo-Díaz, José F., López, Mercedes, Prieto, Miguel, de Toro, María, Alvarez-Ordóñez, Avelino

“…The food processing environments of a newly opened meat processing facility were sampled in ten visits carried out during its first 1.5 years of activity and…”
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A novel metabarcoding approach to investigate Fusarium species composition in soil and plant samples by Cobo-Díaz, José F, Baroncelli, Riccardo, Le Floch, Gaétan, Picot, Adeline

“…The genus Fusarium contains more than 300 species, most of which are plant pathogens. Appropriate molecular tools for accurately and rapidly describing…”
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High pressure processing at the early stages of ripening enhances the safety and quality of dry fermented sausages elaborated with or without starter culture by Dučić, Miroslav, Barcenilla, Coral, Cobo-Díaz, José F., López, Mercedes, Álvarez-Ordóñez, Avelino, Prieto, Miguel

“…[Display omitted] •High pressure processing and starter culture reducedSalmonellaTyphimurium ≥ 2.4 log.•High pressure processing reducedL. monocytogenesby 1.5…”
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Influence of Maize Residues in Shaping Soil Microbiota and Fusarium spp. Communities by Cobo-Díaz, José F., Legrand, Fabienne, Le Floch, Gaétan, Picot, Adeline

“…Fusarium head blight (FHB) is a devastating fungal disease of small grain cereals including wheat. Causal fungal agents colonize various components of the…”
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Novel methods of microbiome analysis in the food industry by Sabater, Carlos, Cobo-Díaz, José F., Álvarez-Ordóñez, Avelino, Ruas-Madiedo, Patricia, Ruiz, Lorena, Margolles, Abelardo

“…The study of the food microbiome has gained considerable interest in recent years, mainly due to the wide range of applications that can be derived from the…”
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Taxonomic and Functional Diversity of a Quercus pyrenaica Willd. Rhizospheric Microbiome in the Mediterranean Mountains by José F. Cobo-Díaz, Antonio J. Fernández-González, Pablo J. Villadas, Nicolás Toro, Susannah G. Tringe, Manuel Fernández-López

“…Altitude significantly affects vegetation growth and distribution, including the developmental stages of a forest. We used shotgun Illumina sequencing to…”
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