Search Results - "Jones, Darcy A. B"

An automated and combinative method for the predictive ranking of candidate effector proteins of fungal plant pathogens by Jones, Darcy A. B., Rozano, Lina, Debler, Johannes W., Mancera, Ricardo L., Moolhuijzen, Paula M., Hane, James K.

“…Fungal plant-pathogens promote infection of their hosts through the release of ‘effectors’—a broad class of cytotoxic or virulence-promoting molecules…”
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Chromosome-level genome assembly and manually-curated proteome of model necrotroph Parastagonospora nodorum Sn15 reveals a genome-wide trove of candidate effector homologs, and redundancy of virulence-related functions within an accessory chromosome by Bertazzoni, Stefania, Jones, Darcy A. B, Phan, Huyen T, Tan, Kar-Chun, Hane, James K

“…Abstract Background The fungus Parastagonospora nodorum causes septoria nodorum blotch (SNB) of wheat ( Triticum aestivum ) and is a model species for…”
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Publisher Correction: An automated and combinative method for the predictive ranking of candidate effector proteins of fungal plant pathogens by Jones, Darcy A. B., Rozano, Lina, Debler, Johannes W., Mancera, Ricardo L., Moolhuijzen, Paula M., Hane, James K.

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Template-Based Modelling of the Structure of Fungal Effector Proteins by Rozano, Lina, Jones, Darcy A. B., Hane, James K., Mancera, Ricardo L.

“…The discovery of new fungal effector proteins is necessary to enable the screening of cultivars for disease resistance. Sequence-based bioinformatics methods…”
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"CATAStrophy," a Genome-Informed Trophic Classification of Filamentous Plant Pathogens - How Many Different Types of Filamentous Plant Pathogens Are There? by Hane, James K, Paxman, Jonathan, Jones, Darcy A B, Oliver, Richard P, de Wit, Pierre

“…The traditional classification of fungal and oomycete phytopathogens into three classes - biotrophs, hemibiotrophs, or necrotrophs - is unsustainable. This…”
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A specific fungal transcription factor controls effector gene expression and orchestrates the establishment of the necrotrophic pathogen lifestyle on wheat by Jones, Darcy A. B., John, Evan, Rybak, Kasia, Phan, Huyen T. T., Singh, Karam B., Lin, Shao-Yu, Solomon, Peter S., Oliver, Richard P., Tan, Kar-Chun

“…The fungus Parastagonospora nodorum infects wheat through the use of necrotrophic effector (NE) proteins that cause host-specific tissue necrosis. The Zn 2 Cys…”
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Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range by Deng, Cecilia H, Plummer, Kim M, Jones, Darcy A B, Mesarich, Carl H, Shiller, Jason, Taranto, Adam P, Robinson, Andrew J, Kastner, Patrick, Hall, Nathan E, Templeton, Matthew D, Bowen, Joanna K

“…Fungal plant pathogens belonging to the genus Venturia cause damaging scab diseases of members of the Rosaceae. In terms of economic impact, the most important…”
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Low Amplitude Boom-and-Bust Cycles Define the Septoria Nodorum Blotch Interaction by Phan, Huyen T T, Jones, Darcy A B, Rybak, Kasia, Dodhia, Kejal N, Lopez-Ruiz, Francisco J, Valade, Romain, Gout, Lilian, Lebrun, Marc-Henri, Brunner, Patrick C, Oliver, Richard P, Tan, Kar-Chun

“…Septoria nodorum blotch (SNB) is a complex fungal disease of wheat caused by the Dothideomycete fungal pathogen . The fungus infects through the use of…”
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Bioinformatic prediction of plant–pathogenicity effector proteins of fungi by Jones, Darcy AB, Bertazzoni, Stefania, Turo, Chala J, Syme, Robert A, Hane, James K

“…•Review of current methods in fungal plant pathogenicity effector protein prediction.•Recent advances have been made in structural and machine learning-based…”
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Remote homology clustering identifies lowly conserved families of effector proteins in plant-pathogenic fungi by Jones, Darcy A B, Moolhuijzen, Paula M, Hane, James K

“…Plant diseases caused by fungal pathogens are typically initiated by molecular interactions between 'effector' molecules released by a pathogen and receptor…”
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Accessories make the outfit: Accessory Chromosomes and other dispensable DNA regions in plant-pathogenic Fungi by Bertazzoni, Stefania, Williams, Angela, Jones, Darcy A B, Syme, Robert A, Tan, Kar-Chun, Hane, James Kyawzwar

“…Fungal pathogen genomes can often be divided into core and accessory regions. Accessory regions may be comprised of either accessory regions (ARs) within core…”
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