Search Results - "Jolene Ramsey"

Disentangling the Frames, the State of Research on the Alphavirus 6K and TF Proteins by Ramsey, Jolene, Mukhopadhyay, Suchetana

“…For 30 years it was thought the alphavirus gene encoded a single 6 kDa protein. However, through a bioinformatics search 10 years ago, it was discovered that…”
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Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation by Ramsey, Jolene, Rasche, Helena, Maughmer, Cory, Criscione, Anthony, Mijalis, Eleni, Liu, Mei, Hu, James C, Young, Ry, Gill, Jason J

“…In the modern genomic era, scientists without extensive bioinformatic training need to apply high-power computational analyses to critical tasks like phage…”
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Characterization and complete genome sequence of Privateer, a highly prolate Proteus mirabilis podophage by Corban, James E, Ramsey, Jolene

“…The Gram-negative bacterium causes a large proportion of catheter-associated urinary tract infections, which are among the world's most common nosocomial…”
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Endolysin Regulation in Phage Mu Lysis by Chamblee, Jake S, Ramsey, Jolene, Chen, Yi, Maddox, Lori T, Ross, Curtis, To, Kam H, Cahill, Jesse L, Young, Ry

“…Bacteriophage Mu is a paradigm coliphage studied mainly because of its use of transposition for genome replication. However, in extensive nonsense mutant…”
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Alphavirus Purification Using Low-speed Spin Centrifugation by Rayaprolu, Vamseedhar, Ramsey, Jolene, Wang, Joseph Che-Yen, Mukhopadhyay, Suchetana

“…Chemical and sedimentation procedures are used to purify virus particles. While these approaches are successful for wild-type viruses, they are often not…”
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Complete Genome Sequence of Escherichia coli Phage Paul by Holt, Ashley, Saldana, Robert, Moreland, Russell, Gill, Jason J., Liu, Mei, Ramsey, Jolene

“…Escherichia coli is both a commensal and a pathogen in humans and other animals. Here, we describe the isolation of E. coli strain 4s bacteriophage Paul. The…”
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Domains of the TF protein important in regulating its own palmitoylation by Ramsey, Jolene, Chavez, Marbella, Mukhopadhyay, Suchetana

“…Sindbis virus particles contain the viral proteins capsid, E1 and E2, and low levels of a small membrane protein called TF. TF is produced during a (−1)…”
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The Gene Ontology knowledgebase in 2023 by Aleksander, Suzi A, Balhoff, James, Carbon, Seth, Cherry, J Michael, Drabkin, Harold J, Ebert, Dustin, Harris, Nomi L, Moxon, Sierra, Mungall, Christopher J, Sternberg, Paul W, Thomas, Paul D, Quaglia, Federica, Giglio, Michelle, Antonazzo, Giulia, Attrill, Helen, dos Santos, Gil, Tabone, Christopher J, Zhou, Pinglei, Ahmed, Saadullah H, Asanitthong, Praoparn, Erdol, Meltem N, Gage, Matthew C, Ali Kadhum, Mohamed, Li, Kan Yan Chloe, Michalak, Aleksandra, Pritazahra, Armalya, Saverimuttu, Shirin C C, Su, Renzhi, Thurlow, Kate E, Lovering, Ruth C, Logie, Colin, Oliferenko, Snezhana, Blake, Judith, Corbani, Lori, Ni, Li, Sitnikov, Dmitry, Smith, Cynthia, Seager, James, Cooper, Laurel, Jaiswal, Pankaj, Naithani, Sushma, Lera-Ramirez, Manuel, Rutherford, Kim, Wood, Valerie, De Pons, Jeffrey L, Dwinell, Melinda R, Hayman, G Thomas, Kwitek, Anne E, Laulederkind, Stanley J F, Tutaj, Marek A, Vedi, Mahima, Wang, Shur-Jen, D’Eustachio, Peter, Axelsen, Kristian, Aleksander, Suzi A, Engel, Stacia R, Karra, Kalpana, Miyasato, Stuart R, Nash, Robert S, Weng, Shuai, Wong, Edith D, Bakker, Erika, Berardini, Tanya Z, Reiser, Leonore, Auchincloss, Andrea, Argoud-Puy, Ghislaine, Blatter, Marie-Claude, Boutet, Emmanuel, Breuza, Lionel, Casals-Casas, Cristina, Gruaz-Gumowski, Nadine, Hulo, Chantal, Jungo, Florence, Le Mercier, Philippe, Masson, Patrick, Pedruzzi, Ivo, Pourcel, Lucille, Poux, Sylvain, Rivoire, Catherine, Sundaram, Shyamala, Bowler-Barnett, Emily, Denny, Paul, Ignatchenko, Alexandr, Lock, Antonia, Magrane, Michele, Martin, Maria J, Raposo, Pedro, Speretta, Elena, Tyagi, Nidhi, Warner, Kate, Zaru, Rossana, Diehl, Alexander D, Lee, Raymond, Chan, Juancarlos, Zarowiecki, Magdalena, Fisher, Malcolm, Ponferrada, Virgilio, Zorn, Aaron, Ramachandran, Sridhar, Ruzicka, Leyla

“…Abstract The Gene Ontology (GO) knowledgebase (http://geneontology.org) is a comprehensive resource concerning the functions of genes and gene products…”
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Phage-encoded cationic antimicrobial peptide required for lysis by Holt, Ashley, Cahill, Jesse, Ramsey, Jolene, Martin, Cody, O'Leary, Chandler, Moreland, Russell, Maddox, Lori T, Galbadage, Thushara, Sharan, Riti, Sule, Preeti, Cirillo, Jeffrey D, Young, Ry

“…Most phages of Gram-negative hosts encode spanins for disruption of the outer membrane, the last step in host lysis. However, bioinformatic analysis indicates…”
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Hybrid Vigor: Importance of Hybrid λ Phages in Early Insights in Molecular Biology by Feiss, Michael, Young, Ryland, Ramsey, Jolene, Adhya, Sankar, Georgopoulos, Costa, Hendrix, Roger W, Hatfull, Graham F, Gilcrease, Eddie B, Casjens, Sherwood R

“…Laboratory-generated hybrids between phage λ and related phages played a seminal role in establishment of the λ model system, which, in turn, served to develop…”
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Palmitoylation of Sindbis Virus TF Protein Regulates Its Plasma Membrane Localization and Subsequent Incorporation into Virions by Ramsey, Jolene, Renzi, Emily C, Arnold, Randy J, Trinidad, Jonathan C, Mukhopadhyay, Suchetana

“…Palmitoylation is a reversible, posttranslational modification that helps target proteins to cellular membranes. The alphavirus small membrane proteins 6K and…”
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Complete Genome Sequence of Escherichia coli Phage Pisces by Diaz, Haydee, Graham, Kristin, Moreland, Russell, Liu, Mei, Ramsey, Jolene

“…Podophage Pisces was isolated against Escherichia coli strain 4s from wastewater samples. Pisces is a T7-like phage, and all 49 predicted protein-coding genes…”
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Complete Genome Sequence of Serratia marcescens Myophage Moabite by Price, Lyndsey, Rohren, Matthew, Newkirk, Heather, Liu, Mei, Ramsey, Jolene

“…is a Gram-negative nosocomial pathogen causing various hospital-acquired infections. Here, we describe the complete genome sequence of myophage Moabite. The…”
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Complete Genome Sequence of Escherichia coli Podophage Peacock by Ruhlman, Erin, Bockoven, Ryan, Moreland, Russell, Liu, Mei, Ramsey, Jolene

“…Escherichia coli is typically a commensal bacterium of the mammalian intestinal tract. Here, the isolation and annotation of the 39,233-bp T7-like E. coli…”
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Complete Genome Sequence of Escherichia coli Siphophage Schulenberg by Rivera, Madeline, Newkirk, Heather, Moreland, Russell, Liu, Mei, Ramsey, Jolene

“…Escherichia coli bacteria and their infecting bacteriophage exist within the gut. Here, we present the complete genome of Schulenberg, an E. coli siphophage…”
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Complete Genome Sequence of Escherichia coli Podophage Penshu1 by Pechacek, Douglas, Hwangbo, Myung, Moreland, Russell, Liu, Mei, Ramsey, Jolene

“…Escherichia coli 4s is a Gram-negative bacterium found in the equine intestinal ecosystem alongside diverse other coliform bacteria and bacteriophages. This…”
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Complete Genome Sequence of Escherichia coli Siphophage Sciku by Hernandez, Isla, Castillo, Micah, Moreland, Russell, Liu, Mei, Ramsey, Jolene

“…Escherichia coli is a Gram-negative bacterium that is found in humans and animals as both a commensal organism and a pathogen. This report describes the…”
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Complete Genome Sequence of Escherichia coli Myophage Minorna by Rogers, Katherine, Min, Lorna, Newkirk, Heather, Liu, Mei, Ramsey, Jolene

“…The Gram-negative bacterium causes many diseases, and antibiotic resistance has become a problem for their treatment. Bacteriophages may present a viable…”
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Complete Genome Sequence of Streptomyces Phage Sentinel by Talcott, Andrew, Moreland, Russell, Ramsey, Jolene, Clark, James, Hernandez, Isla, Liu, Mei, Burrowes, Ben

“…The genus produces over two-thirds of clinically useful, natural antibiotics. Here, we describe the isolation and genome annotation of siphophage Sentinel,…”
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Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO) by Jolene Ramsey, Brenley McIntosh, Daniel Renfro, Suzanne A. Aleksander, Sandra LaBonte, Curtis Ross, Adrienne E. Zweifel, Nathan Liles, Shabnam Farrar, Jason J. Gill, Ivan Erill, Sarah Ades, Tanya Z. Berardini, Jennifer A. Bennett, Siobhan Brady, Robert Britton, Seth Carbon, Steven M. Caruso, Dave Clements, Ritu Dalia, Meredith Defelice, Erin L. Doyle, Iddo Friedberg, Susan M. R. Gurney, Lee Hughes, Allison Johnson, Jason M. Kowalski, Donghui Li, Ruth C. Lovering, Tamara L. Mans, Fiona McCarthy, Sean D. Moore, Rebecca Murphy, Timothy D. Paustian, Sarah Perdue, Celeste N. Peterson, Birgit M. Prüß, Margaret S. Saha, Robert R. Sheehy, John T. Tansey, Louise Temple, Alexander William Thorman, Saul Trevino, Amy Cheng Vollmer, Virginia Walbot, Joanne Willey, Deborah A. Siegele, James C. Hu

“…Experimental data about gene functions curated from the primary literature have enormous value for research scientists in understanding biology. Using the Gene…”
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