Search Results - "Johnson, Charles D."

The let-7 MicroRNA represses cell proliferation pathways in human cells by JOHNSON, Charles D, ESQUELA-KERSCHER, Aurora, CHIN, Lena, BROWN, David, SLACK, Frank J, STEFANI, Giovanni, BYROM, Mike, KELNAR, Kevin, OVCHARENKO, Dmitriy, WILSON, Mike, XIAOWEI WANG, SHELTON, Jeffrey, SHINGARA, Jaclyn

“…MicroRNAs play important roles in animal development, cell differentiation, and metabolism and have been implicated in human cancer. The let-7 microRNA…”
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Comparative transcriptomic analysis of germinating rice seedlings to individual and combined anaerobic and cold stress by Thapa, Ranjita, Tabien, Rodante E, Johnson, Charles D, Septiningsih, Endang M

“…Rice is one of the most important cereals consumed worldwide. Two major abiotic factors affecting rice plants in different growth stages are flooding stress…”
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Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing by Tian, Bin, Wang, Shichen, Todd, Timothy C, Johnson, Charles D, Tang, Guiliang, Trick, Harold N

“…The soybean cyst nematode (SCN), Heterodera glycines, is one of the most devastating diseases limiting soybean production worldwide. It is known that small…”
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Horse Y chromosome assembly displays unique evolutionary features and putative stallion fertility genes by Janečka, Jan E., Davis, Brian W., Ghosh, Sharmila, Paria, Nandina, Das, Pranab J., Orlando, Ludovic, Schubert, Mikkel, Nielsen, Martin K., Stout, Tom A. E., Brashear, Wesley, Li, Gang, Johnson, Charles D., Metz, Richard P., Zadjali, Al Muatasim Al, Love, Charles C., Varner, Dickson D., Bellott, Daniel W., Murphy, William J., Chowdhary, Bhanu P., Raudsepp, Terje

“…Dynamic evolutionary processes and complex structure make the Y chromosome among the most diverse and least understood regions in mammalian genomes. Here, we…”
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Genome wide identification of QTL associated with yield and yield components in two popular wheat cultivars TAM 111 and TAM 112 by Yang, Yan, Dhakal, Smit, Chu, Chenggen, Wang, Shichen, Xue, Qingwu, Rudd, Jackie C, Ibrahim, Amir M H, Jessup, Kirk, Baker, Jason, Fuentealba, Maria Pilar, Devkota, Ravindra, Baker, Shannon, Johnson, Charles D, Metz, Richard, Liu, Shuyu

“…Two drought-tolerant wheat cultivars, 'TAM 111' and 'TAM 112', have been widely grown in the Southern Great Plains of the U.S. and used as parents in many…”
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Modulation of RNA Polymerase II Phosphorylation Downstream of Pathogen Perception Orchestrates Plant Immunity by Li, Fangjun, Cheng, Cheng, Cui, Fuhao, de Oliveira, Marcos V.V., Yu, Xiao, Meng, Xiangzong, Intorne, Aline C., Babilonia, Kevin, Li, Maoying, Li, Bo, Chen, Sixue, Ma, Xianfeng, Xiao, Shunyuan, Zheng, Yi, Fei, Zhangjun, Metz, Richard P., Johnson, Charles D., Koiwa, Hisashi, Sun, Wenxian, Li, Zhaohu, Filho, Gonçalo A. de Souza, Shan, Libo, He, Ping

“…Perception of microbe-associated molecular patterns (MAMPs) elicits host transcriptional reprogramming as part of the immune response. Although pathogen…”
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Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae by Qiu, Chenxi, Jin, Huiyan, Vvedenskaya, Irina, Llenas, Jordi Abante, Zhao, Tingting, Malik, Indranil, Visbisky, Alex M, Schwartz, Scott L, Cui, Ping, Čabart, Pavel, Han, Kang Hoo, Lai, William K M, Metz, Richard P, Johnson, Charles D, Sze, Sing-Hoi, Pugh, B Franklin, Nickels, Bryce E, Kaplan, Craig D

“…The majority of eukaryotic promoters utilize multiple transcription start sites (TSSs). How multiple TSSs are specified at individual promoters across…”
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RNA-seq analysis reveals different drought tolerance mechanisms in two broadly adapted wheat cultivars ‘TAM 111’ and ‘TAM 112’ by Chu, Chenggen, Wang, Shichen, Paetzold, Li, Wang, Zhen, Hui, Kele, Rudd, Jackie C., Xue, Qingwu, Ibrahim, Amir M. H., Metz, Richard, Johnson, Charles D., Rush, Charles M., Liu, Shuyu

“…Wheat cultivars ‘TAM 111’ and ‘TAM 112’ have been dominantly grown in the Southern U.S. Great Plains for many years due to their high yield and drought…”
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Characterization of triatomine bloodmeal sources using direct Sanger sequencing and amplicon deep sequencing methods by Balasubramanian, Sujata, Curtis-Robles, Rachel, Chirra, Bhagath, Auckland, Lisa D., Mai, Alan, Bocanegra-Garcia, Virgilio, Clark, Patti, Clark, Wilhelmina, Cottingham, Mark, Fleurie, Geraldine, Johnson, Charles D., Metz, Richard P., Wang, Shichen, Hathaway, Nicholas J., Bailey, Jeffrey A., Hamer, Gabriel L., Hamer, Sarah A.

“…Knowledge of host associations of blood-feeding vectors may afford insights into managing disease systems and protecting public health. However, the ability of…”
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Transcriptome Analysis of Developing Grains from Wheat Cultivars TAM 111 and TAM 112 Reveal Cultivar-Specific Regulatory Networks by Fang, Ze-Tian, Kapoor, Rajan, Datta, Aniruddha, Liu, Shuyu, Stull, Matthew A., Seitz, Paige G., Johnson, Charles D., Okumoto, Sakiko

“…Wheat flour’s end-use quality is tightly linked to the quantity and composition of storage proteins in the endosperm. TAM 111 and TAM 112 are two popular…”
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HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment by Abante, Jordi, Ghaffari, Noushin, Johnson, Charles D, Datta, Aniruddha

“…The information content of genomes plays a crucial role in the existence and proper development of living organisms. Thus, tremendous effort has been dedicated…”
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A draft de novo genome assembly for the northern bobwhite (Colinus virginianus) reveals evidence for a rapid decline in effective population size beginning in the Late Pleistocene by Halley, Yvette A, Dowd, Scot E, Decker, Jared E, Seabury, Paul M, Bhattarai, Eric, Johnson, Charles D, Rollins, Dale, Tizard, Ian R, Brightsmith, Donald J, Peterson, Markus J, Taylor, Jeremy F, Seabury, Christopher M

“…Wild populations of northern bobwhites (Colinus virginianus; hereafter bobwhite) have declined across nearly all of their U.S. range, and despite their…”
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Accurate Genomic Predictions for Chronic Wasting Disease in U.S. White-Tailed Deer by Seabury, Christopher M, Oldeschulte, David L, Bhattarai, Eric K, Legare, Dhruti, Ferro, Pamela J, Metz, Richard P, Johnson, Charles D, Lockwood, Mitchell A, Nichols, Tracy A

“…The geographic expansion of chronic wasting disease (CWD) in U.S. white-tailed deer ( ) has been largely unabated by best management practices, diagnostic…”
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Brucella activates the host RIDD pathway to subvert BLOS1-directed immune defense by Wells, Kelsey Michelle, He, Kai, Pandey, Aseem, Cabello, Ana, Zhang, Dongmei, Yang, Jing, Gomez, Gabriel, Liu, Yue, Chang, Haowu, Li, Xueqiang, Zhang, Hao, Feng, Xuehuang, da Costa, Luciana Fachini, Metz, Richard, Johnson, Charles D, Martin, Cameron Lee, Skrobarczyk, Jill, Berghman, Luc R, Patrick, Kristin L, Leibowitz, Julian, Ficht, Allison, Sze, Sing-Hoi, Song, Jianxun, Qian, Xiaoning, Qin, Qing-Ming, Ficht, Thomas A, de Figueiredo, Paul

“…The phagocytosis and destruction of pathogens in lysosomes constitute central elements of innate immune defense. Here, we show that , the causative agent of…”
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Horn fly transcriptome data of ten populations from the southern United States with varying degrees and molecular mechanisms of pesticide resistance by Bendele, Kylie G., Guerrero, Felix D., Lohmeyer, Kimberly H., Foil, Lane D., Metz, Richard P., Johnson, Charles D.

“…Haematobia irritans irritans (Linnaeus, 1758: Diptera: Muscidae), the horn fly, is an external parasite of penned and pastured livestock that causes a major…”
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Annotated Draft Genome Assemblies for the Northern Bobwhite ( Colinus virginianus ) and the Scaled Quail ( Callipepla squamata ) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size by Oldeschulte, David L, Halley, Yvette A, Wilson, Miranda L, Bhattarai, Eric K, Brashear, Wesley, Hill, Joshua, Metz, Richard P, Johnson, Charles D, Rollins, Dale, Peterson, Markus J, Bickhart, Derek M, Decker, Jared E, Sewell, John F, Seabury, Christopher M

“…Northern bobwhite ( ; hereafter bobwhite) and scaled quail ( ) populations have suffered precipitous declines across most of their US ranges. Illumina-based…”
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Genome-wide QTL mapping of yield and agronomic traits in two widely adapted winter wheat cultivars from multiple mega-environments by Dhakal, Smit, Liu, Xiaoxiao, Chu, Chenggen, Yang, Yan, Rudd, Jackie C, Ibrahim, Amir M H, Xue, Qingwu, Devkota, Ravindra N, Baker, Jason A, Baker, Shannon A, Simoneaux, Bryan E, Opena, Geraldine B, Sutton, Russell, Jessup, Kirk E, Hui, Kele, Wang, Shichen, Johnson, Charles D, Metz, Richard P, Liu, Shuyu

“…Quantitative trait loci (QTL) analysis could help to identify suitable molecular markers for marker-assisted breeding (MAB). A mapping population of 124 F…”
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Mapping QTL for Yield and Its Component Traits Using Wheat (Triticum aestivum L.) RIL Mapping Population from TAM 113 × Gallagher by Cerit, Mustafa, Wang, Zhen, Dogan, Mehmet, Yu, Shuhao, Valenzuela-Antelo, Jorge L., Chu, Chenggen, Wang, Shichen, Xue, Qingwu, Ibrahim, Amir M. H., Rudd, Jackie C., Metz, Richard, Johnson, Charles D., Liu, Shuyu

“…Understanding genetic architectures of yield and yield-related traits of wheat (Triticum aestivum L.) grown under dryland or irrigated conditions is pivotal…”
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Using RNA sample titrations to assess microarray platform performance and normalization techniques by Shippy, Richard, Fulmer-Smentek, Stephanie, Jensen, Roderick V, Jones, Wendell D, Wolber, Paul K, Johnson, Charles D, Pine, P Scott, Boysen, Cecilie, Guo, Xu, Chudin, Eugene, Sun, Yongming Andrew, Willey, James C, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Setterquist, Robert A, Wilson, Mike, Lucas, Anne Bergstrom, Novoradovskaya, Natalia, Papallo, Adam, Turpaz, Yaron, Baker, Shawn C, Warrington, Janet A, Shi, Leming, Herman, Damir

“…We have assessed the utility of RNA titration samples for evaluating microarray platform performance and the impact of different normalization methods on the…”
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Reference-Guided De Novo Genome Assembly to Dissect a QTL Region for Submergence Tolerance Derived from Ciherang-Sub1 by Liang, Yuya, Wang, Shichen, Harper, Chersty L, Subramanian, Nithya K, Tabien, Rodante E, Johnson, Charles D, Bailey-Serres, Julia, Septiningsih, Endang M

“…Global climate change has increased the number of severe flooding events that affect agriculture, including rice production in the U.S. and internationally…”
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