Search Results - "Jin Song, Se"

Cohabiting family members share microbiota with one another and with their dogs by Song, Se Jin, Lauber, Christian, Costello, Elizabeth K, Lozupone, Catherine A, Humphrey, Gregory, Berg-Lyons, Donna, Caporaso, J Gregory, Knights, Dan, Clemente, Jose C, Nakielny, Sara, Gordon, Jeffrey I, Fierer, Noah, Knight, Rob

“…Human-associated microbial communities vary across individuals: possible contributing factors include (genetic) relatedness, diet, and age. However, our…”
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Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies by Song, Se Jin, Amir, Amnon, Metcalf, Jessica L, Amato, Katherine R, Xu, Zhenjiang Zech, Humphrey, Greg, Knight, Rob

“…Immediate freezing at -20°C or below has been considered the gold standard for microbiome preservation, yet this approach is not feasible for many field…”
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Balance Trees Reveal Microbial Niche Differentiation by Morton, James T, Sanders, Jon, Quinn, Robert A, McDonald, Daniel, Gonzalez, Antonio, Vázquez-Baeza, Yoshiki, Navas-Molina, Jose A, Song, Se Jin, Metcalf, Jessica L, Hyde, Embriette R, Lladser, Manuel, Dorrestein, Pieter C, Knight, Rob

“…Advances in sequencing technologies have enabled novel insights into microbial niche differentiation, from analyzing environmental samples to understanding…”
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Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome by Taylor, Bryn C, Lejzerowicz, Franck, Poirel, Marion, Shaffer, Justin P, Jiang, Lingjing, Aksenov, Alexander, Litwin, Nicole, Humphrey, Gregory, Martino, Cameron, Miller-Montgomery, Sandrine, Dorrestein, Pieter C, Veiga, Patrick, Song, Se Jin, McDonald, Daniel, Derrien, Muriel, Knight, Rob

“…Lifestyle factors, such as diet, strongly influence the structure, diversity, and composition of the microbiome. While we have witnessed over the last several…”
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Home chemical and microbial transitions across urbanization by McCall, Laura-Isobel, Callewaert, Chris, Zhu, Qiyun, Song, Se Jin, Bouslimani, Amina, Minich, Jeremiah J., Ernst, Madeleine, Ruiz-Calderon, Jean F., Cavallin, Humberto, Pereira, Henrique S., Novoselac, Atila, Hernandez, Jean, Rios, Rafael, Branch, OraLee H., Blaser, Martin J., Paulino, Luciana C., Dorrestein, Pieter C., Knight, Rob, Dominguez-Bello, Maria G.

“…Urbanization represents a profound shift in human behaviour, and has considerable cultural and health-associated consequences 1 , 2 . Here, we investigate…”
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The impact of maternal asthma on the preterm infants' gut metabolome and microbiome (MAP study) by Bai-Tong, Shiyu S., Thoemmes, Megan S., Weldon, Kelly C., Motazavi, Diba, Kitsen, Jessica, Hansen, Shalisa, Furst, Annalee, Geng, Bob, Song, Se Jin, Gilbert, Jack A., Bode, Lars, Dorrestein, Pieter C., Knight, Rob, Leibel, Sydney A., Leibel, Sandra L.

“…Preterm infants are at a greater risk for the development of asthma and atopic disease, which can lead to lifelong negative health consequences. This may be…”
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Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References by Hakim, Daniel, Wandro, Stephen, Zengler, Karsten, Zaramela, Livia S, Nowinski, Brent, Swafford, Austin, Zhu, Qiyun, Song, Se Jin, Gonzalez, Antonio, McDonald, Daniel, Knight, Rob

“…Assigning taxonomy remains a challenging topic in microbiome studies, due largely to ambiguity of reads which overlap multiple reference genomes. With the Web…”
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Effects of Variation in Urine Sample Storage Conditions on 16S Urogenital Microbiome Analyses by Kumar, Tanya, Bryant, MacKenzie, Cantrell, Kalen, Song, Se Jin, McDonald, Daniel, Tubb, Helena M, Farmer, Sawyer, Lukacz, Emily S, Brubaker, Linda, Knight, Rob

“…Replicability is a well-established challenge in microbiome research with a variety of contributing factors at all stages, from sample collection to code…”
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The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat by Hyde, Embriette R, Navas-Molina, Jose A, Song, Se Jin, Kueneman, Jordan G, Ackermann, Gail, Cardona, Cesar, Humphrey, Gregory, Boyer, Don, Weaver, Tom, Mendelson, 3rd, Joseph R, McKenzie, Valerie J, Gilbert, Jack A, Knight, Rob

“…Examining the way in which animals, including those in captivity, interact with their environment is extremely important for studying ecological processes and…”
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Microbiome analyses of blood and tissues suggest cancer diagnostic approach by Poore, Gregory D, Kopylova, Evguenia, Zhu, Qiyun, Carpenter, Carolina, Fraraccio, Serena, Wandro, Stephen, Kosciolek, Tomasz, Janssen, Stefan, Metcalf, Jessica, Song, Se Jin, Kanbar, Jad, Miller-Montgomery, Sandrine, Heaton, Robert, Mckay, Rana, Patel, Sandip Pravin, Swafford, Austin D, Knight, Rob

“…Systematic characterization of the cancer microbiome provides the opportunity to develop techniques that exploit non-human, microorganism-derived molecules in…”
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Tiny microbes, enormous impacts: what matters in gut microbiome studies? by Debelius, Justine, Song, Se Jin, Vazquez-Baeza, Yoshiki, Xu, Zhenjiang Zech, Gonzalez, Antonio, Knight, Rob

“…Many factors affect the microbiomes of humans, mice, and other mammals, but substantial challenges remain in determining which of these factors are of…”
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From Sample to Multi-Omics Conclusions in under 48 Hours by Quinn, Robert A, Navas-Molina, Jose A, Hyde, Embriette R, Song, Se Jin, Vázquez-Baeza, Yoshiki, Humphrey, Greg, Gaffney, James, Minich, Jeremiah J, Melnik, Alexey V, Herschend, Jakob, DeReus, Jeff, Durant, Austin, Dutton, Rachel J, Khosroheidari, Mahdieh, Green, Clifford, da Silva, Ricardo, Dorrestein, Pieter C, Knight, Rob

“…Multi-omics methods have greatly advanced our understanding of the biological organism and its microbial associates. However, they are not routinely used in…”
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Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer by Dominguez-Bello, Maria G, De Jesus-Laboy, Kassandra M, Shen, Nan, Cox, Laura M, Amir, Amnon, Gonzalez, Antonio, Bokulich, Nicholas A, Song, Se Jin, Hoashi, Marina, Rivera-Vinas, Juana I, Mendez, Keimari, Knight, Rob, Clemente, Jose C

“…The microbiota of cesarean-born infants can be partially restored to that of vaginally born infants immediately after birth. Exposure of newborns to the…”
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The human microbiome in evolution by Davenport, Emily R, Sanders, Jon G, Song, Se Jin, Amato, Katherine R, Clark, Andrew G, Knight, Rob

“…The trillions of microbes living in the gut-the gut microbiota-play an important role in human biology and disease. While much has been done to explore its…”
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Engineering the microbiome for animal health and conservation by Jin Song, Se, Woodhams, Douglas C, Martino, Cameron, Allaband, Celeste, Mu, Andre, Javorschi-Miller-Montgomery, Sandrine, Suchodolski, Jan S, Knight, Rob

“…Interest in animal microbiomes as therapeutics is rapidly expanding, as techniques to study the microbial world decrease in cost and increase in accessibility…”
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Greengenes2 unifies microbial data in a single reference tree by McDonald, Daniel, Jiang, Yueyu, Balaban, Metin, Cantrell, Kalen, Zhu, Qiyun, Gonzalez, Antonio, Morton, James T., Nicolaou, Giorgia, Parks, Donovan H., Karst, Søren M., Albertsen, Mads, Hugenholtz, Philip, DeSantis, Todd, Song, Se Jin, Bartko, Andrew, Havulinna, Aki S., Jousilahti, Pekka, Cheng, Susan, Inouye, Michael, Niiranen, Teemu, Jain, Mohit, Salomaa, Veikko, Lahti, Leo, Mirarab, Siavash, Knight, Rob

“…Studies using 16S rRNA and shotgun metagenomics typically yield different results, usually attributed to PCR amplification biases. We introduce Greengenes2, a…”
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Learning representations of microbe–metabolite interactions by Morton, James T., Aksenov, Alexander A., Nothias, Louis Felix, Foulds, James R., Quinn, Robert A., Badri, Michelle H., Swenson, Tami L., Van Goethem, Marc W., Northen, Trent R., Vazquez-Baeza, Yoshiki, Wang, Mingxun, Bokulich, Nicholas A., Watters, Aaron, Song, Se Jin, Bonneau, Richard, Dorrestein, Pieter C., Knight, Rob

“…Integrating multiomics datasets is critical for microbiome research; however, inferring interactions across omics datasets has multiple statistical challenges…”
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The Treatment-Naive Microbiome in New-Onset Crohn’s Disease by Gevers, Dirk, Kugathasan, Subra, Denson, Lee A., Vázquez-Baeza, Yoshiki, Van Treuren, Will, Ren, Boyu, Schwager, Emma, Knights, Dan, Song, Se Jin, Yassour, Moran, Morgan, Xochitl C., Kostic, Aleksandar D., Luo, Chengwei, González, Antonio, McDonald, Daniel, Haberman, Yael, Walters, Thomas, Baker, Susan, Rosh, Joel, Stephens, Michael, Heyman, Melvin, Markowitz, James, Baldassano, Robert, Griffiths, Anne, Sylvester, Francisco, Mack, David, Kim, Sandra, Crandall, Wallace, Hyams, Jeffrey, Huttenhower, Curtis, Knight, Rob, Xavier, Ramnik J.

“…Inflammatory bowel diseases (IBDs), including Crohn’s disease (CD), are genetically linked to host pathways that implicate an underlying role for aberrant…”
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Tomato salt‐responsive pseudo‐response regulator 1, SlSRP1, negatively regulates the high‐salt and dehydration stress responses by Bae, Yeongil, Song, Se Jin, Lim, Chae Woo, Kim, Chul Min, Lee, Sung Chul

“…Under severe environmental stress conditions, plants inhibit their growth and development and initiate various defense mechanisms to survive. The…”
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Convergence of gut microbiomes in myrmecophagous mammals by Delsuc, Frédéric, Metcalf, Jessica L, Wegener Parfrey, Laura, Song, Se Jin, González, Antonio, Knight, Rob

“…Mammals have diversified into many dietary niches. Specialized myrmecophagous (ant‐ and termite‐eating) placental mammals represent a textbook example of…”
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