Search Results - "Jin, Yumi"

NCBI's Database of Genotypes and Phenotypes: dbGaP by Tryka, Kimberly A, Hao, Luning, Sturcke, Anne, Jin, Yumi, Wang, Zhen Y, Ziyabari, Lora, Lee, Moira, Popova, Natalia, Sharopova, Nataliya, Kimura, Masato, Feolo, Michael

“…The Database of Genotypes and Phenotypes (dbGap, http://www.ncbi.nlm.nih.gov/gap) is a National Institutes of Health-sponsored repository charged to archive,…”
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The NCBI dbGaP database of genotypes and phenotypes by Sherry, Stephen T, Mailman, Matthew D, Feolo, Michael, Jin, Yumi, Kimura, Masato, Tryka, Kimberly, Bagoutdinov, Rinat, Hao, Luning, Kiang, Anne, Paschall, Justin, Phan, Lon, Popova, Natalia, Pretel, Stephanie, Ziyabari, Lora, Lee, Moira, Shao, Yu, Wang, Zhen Y, Sirotkin, Karl, Ward, Minghong, Kholodov, Michael, Zbicz, Kerry, Beck, Jeffrey, Kimelman, Michael, Shevelev, Sergey, Preuss, Don, Yaschenko, Eugene, Graeff, Alan, Ostell, James

“…The National Center for Biotechnology Information has created the dbGaP public repository for individual-level phenotype, exposure, genotype and sequence data…”
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Quickly identifying identical and closely related subjects in large databases using genotype data by Jin, Yumi, Schäffer, Alejandro A, Sherry, Stephen T, Feolo, Michael

“…Genome-wide association studies (GWAS) usually rely on the assumption that different samples are not from closely related individuals. Detection of duplicates…”
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GRAF-pop: A Fast Distance-Based Method To Infer Subject Ancestry from Multiple Genotype Datasets Without Principal Components Analysis by Jin, Yumi, Schaffer, Alejandro A, Feolo, Michael, Holmes, J Bradley, Kattman, Brandi L

“…Inferring subject ancestry using genetic data is an important step in genetic association studies, required for dealing with population stratification. It has…”
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Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows by Connor, Ryan, Shakya, Migun, Yarmosh, David A, Maier, Wolfgang, Martin, Ross, Bradford, Rebecca, Brister, J Rodney, Chain, Patrick S G, Copeland, Courtney A, di Iulio, Julia, Hu, Bin, Ebert, Philip, Gunti, Jonathan, Jin, Yumi, Katz, Kenneth S, Kochergin, Andrey, LaRosa, Tré, Li, Jiani, Li, Po-E, Lo, Chien-Chi, Rashid, Sujatha, Maiorova, Evguenia S, Xiao, Chunlin, Zalunin, Vadim, Purcell, Lisa, Pruitt, Kim D

“…Genomic sequencing of clinical samples to identify emerging variants of SARS-CoV-2 has been a key public health tool for curbing the spread of the virus. As a…”
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Assessment of fold recognition predictions in CASP6 by Wang, Guoli, Jin, Yumi, Dunbrack Jr, Roland L.

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Abstract 789: GrafGen: Distance-Based Inference of Population Ancestry for Helicobacter pylori Genomes by Wheeler, William, Wang, Difei, Zhao, Isaac, Jin, Yumi, Rabkin, Charles S.

“…BACKGROUND: The 1.67 megabase H. pylori genome contains ~143,000 biallelic single-nucleotide polymorphisms (SNP) with minor allele frequency > 1%. Confounding…”
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Antifreeze glycoprotein levels in Antarctic notothenioid fishes inhabiting different thermal environments and the effect of warm acclimation by Jin, Yumi, DeVries, Arthur L.

“…A quantification method was developed to determine the concentrations of the major antifreeze glycoprotein (AFGP) isoforms in the blood of Antarctic…”
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Assessment of disorder predictions in CASP6 by Jin, Yumi, Dunbrack Jr, Roland L.

“…Natively disordered proteins or protein segments are those without stable secondary or tertiary structure in the absence of binding partners. Such disordered…”
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Assessment of fold recognition predictions in CASP6 by Wang, Guoli, Jin, Yumi, Dunbrack, Roland L.

“…The Sixth Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP6) held in December 2004 focused on the…”
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Functional antifreeze glycoprotein genes in temperate-water New Zealand nototheniid fish infer an Antarctic evolutionary origin by Cheng, Chi-Hing C, Chen, Liangbiao, Near, Thomas J, Jin, Yumi

“…The fish fauna of the Antarctic Ocean is dominated by five endemic families of the Perciform suborder Notothenioidei, thought to have arisen in situ within the…”
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Freezing avoidance of Antarctic fishes: The role of a novel antifreeze potentiating protein and the antifreeze glycoproteins by Jin, Yumi

“…A novel ice-biding protein was isolated and purified from Antarctic notothenioid fishes. This protein was named antifreeze potentiating protein (AFPP) because…”
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