Search Results - "Jim, Swoger"

The role of spatially controlled cell proliferation in limb bud morphogenesis by Boehm, Bernd, Westerberg, Henrik, Lesnicar-Pucko, Gaja, Raja, Sahdia, Rautschka, Michael, Cotterell, James, Swoger, Jim, Sharpe, James

“…Although the vertebrate limb bud has been studied for decades as a model system for spatial pattern formation and cell specification, the cellular basis of its…”
Get full text

Defined chromosome structure in the genome-reduced bacterium Mycoplasma pneumoniae by Trussart, Marie, Yus, Eva, Martinez, Sira, Baù, Davide, Tahara, Yuhei O., Pengo, Thomas, Widjaja, Michael, Kretschmer, Simon, Swoger, Jim, Djordjevic, Steven, Turnbull, Lynne, Whitchurch, Cynthia, Miyata, Makoto, Marti-Renom, Marc A., Lluch-Senar, Maria, Serrano, Luís

“…DNA-binding proteins are central regulators of chromosome organization; however, in genome-reduced bacteria their diversity is largely diminished. Whether the…”
Get full text

Optical sectioning deep inside live embryos by selective plane illumination microscopy by Huisken, J, Swoger, J, Del Bene, F, Wittbrodt, J, Stelzer, E.H.K

“…Large, living biological specimens present challenges to existing optical imaging techniques because of their absorptive and scattering properties. We…”
Get full text

OPTiSPIM: integrating optical projection tomography in light sheet microscopy extends specimen characterization to nonfluorescent contrasts by Mayer, Jürgen, Robert-Moreno, Alexandre, Danuser, Renzo, Stein, Jens V, Sharpe, James, Swoger, Jim

“…Mesoscopic 3D imaging has become a widely used optical imaging technique to visualize intact biological specimens. Selective plane illumination microscopy…”
Get more information

Antigen Availability and DOCK2-Driven Motility Govern CD4 + T Cell Interactions with Dendritic Cells In Vivo by Ackerknecht, Markus, Gollmer, Kathrin, Germann, Philipp, Ficht, Xenia, Abe, Jun, Fukui, Yoshinori, Swoger, Jim, Ripoll, Jorge, Sharpe, James, Stein, Jens V

“…Parenchymal migration of naive CD4 T cells in lymph nodes (LNs) is mediated by the Rac activator DOCK2 and PI3Kγ and is widely assumed to facilitate efficient…”
Get full text

Light sheet fluorescence microscopy for in situ cell interaction analysis in mouse lymph nodes by Abe, Jun, Ozga, Aleksandra J., Swoger, Jim, Sharpe, James, Ripoll, Jorge, Stein, Jens V.

“…Reactive lymph nodes (LNs) are sites where pMHC-loaded dendritic cells (DCs) interact with rare cognate T cells, leading to their clonal expansion. While DC…”
Get full text

Quantification of gene expression patterns to reveal the origins of abnormal morphogenesis by Martínez-Abadías, Neus, Mateu Estivill, Roger, Sastre Tomas, Jaume, Motch Perrine, Susan, Yoon, Melissa, Robert-Moreno, Alexandre, Swoger, Jim, Russo, Lucia, Kawasaki, Kazuhiko, Richtsmeier, Joan, Sharpe, James

“…The earliest developmental origins of dysmorphologies are poorly understood in many congenital diseases. They often remain elusive because the first signs of…”
Get full text

Naive B-cell trafficking is shaped by local chemokine availability and LFA-1–independent stromal interactions by Coelho, Fernanda M., Natale, Daniela, Soriano, Silvia F., Hons, Miroslav, Swoger, Jim, Mayer, Jürgen, Danuser, Renzo, Scandella, Elke, Pieczyk, Markus, Zerwes, Hans-Günter, Junt, Tobias, Sailer, Andreas W., Ludewig, Burkhard, Sharpe, James, Figge, Marc Thilo, Stein, Jens V.

“…It is not known how naive B cells compute divergent chemoattractant signals of the T-cell area and B-cell follicles during in vivo migration. Here, we used…”
Get full text

From Mouse to Man and Back: Closing the Correlation Gap between Imaging and Histopathology for Lung Diseases by Tielemans, Birger, Dekoster, Kaat, Verleden, Stijn E, Sawall, Stefan, Leszczyński, Bartosz, Laperre, Kjell, Vanstapel, Arno, Verschakelen, Johny, Kachelriess, Marc, Verbeken, Erik, Swoger, Jim, Vande Velde, Greetje

“…Lung diseases such as fibrosis, asthma, cystic fibrosis, infection and cancer are life-threatening conditions that slowly deteriorate quality of life and for…”
Get full text

Born With Bristles: New Insights on the Kölliker’s Organs of Octopus Skin by Villanueva, Roger, Coll-Lladó, Montserrat, Bonnaud-Ponticelli, Laure, Carrasco, Sergio A., Escolar, Oscar, Fernández-Álvarez, Fernando Á., Gleadall, Ian G., Nabhitabhata, Jaruwat, Ortiz, Nicolás, Rosas, Carlos, Sánchez, Pilar, Voight, Janet R., Swoger, Jim

“…The entire skin surface of octopus embryos, hatchlings and juveniles bears scattered tufts of tiny chitinous setae within small pockets, from which they can be…”
Get full text

4D retrospective lineage tracing using SPIM for zebrafish organogenesis studies by Swoger, Jim, Muzzopappa, Mariana, López-Schier, Hernán, Sharpe, James

“…A study demonstrating an imaging framework that permits the determination of cell lineages during organogenesis of the posterior lateral line in zebrafish is…”
Get full text

Intravital imaging of hair-cell development and regeneration in the zebrafish by Pinto-Teixeira, Filipe, Muzzopappa, Mariana, Swoger, Jim, Mineo, Alessandro, Sharpe, James, López-Schier, Hernán

“…Direct videomicroscopic visualization of organ formation and regeneration in toto is a powerful strategy to study cellular processes that often cannot be…”
Get full text

Decrease in Cell Volume Generates Contractile Forces Driving Dorsal Closure by Saias, Laure, Swoger, Jim, D’Angelo, Arturo, Hayes, Peran, Colombelli, Julien, Sharpe, James, Salbreux, Guillaume, Solon, Jérôme

“…Biological tissues must generate forces to shape organs and achieve proper development. Such forces often result from the contraction of an apical acto-myosin…”
Get full text

Ontogenetic and evolutionary trends on cephalopod digestive systems by Vilarnau, Diego G., Fernández-Álvarez, Fernando Á., Coll-Lladó, Montserrat, Gritti, Nicola, Swoger, Jim, Villanueva, Roger

“…Meropelagic octopuses hatch as planktonic paralarvae, being the subject of progressive morphological and behavioural changes ending with settlement on the…”
Get full text

pMHC affinity controls duration of CD8+ T cell-DC interactions and imprints timing of effector differentiation versus expansion by Ozga, Aleksandra J, Moalli, Federica, Abe, Jun, Swoger, Jim, Sharpe, James, Zehn, Dietmar, Kreutzfeldt, Mario, Merkler, Doron, Ripoll, Jorge, Stein, Jens V

“…During adaptive immune responses, CD8 T cells with low TCR affinities are released early into the circulation before high-affinity clones become dominant at…”
Get full text

Maximizing content across scales: Moving multimodal microscopy and mesoscopy toward molecular imaging by Munck, Sebastian, Swoger, Jim, Coll-Lladó, Montserrat, Gritti, Nicola, Vande Velde, Greetje

“…Molecular imaging aims to depict the molecules in living patients. However, because this aim is still far beyond reach, patchworks of different solutions need…”
Get full text

REMBI: Recommended Metadata for Biological Images—enabling reuse of microscopy data in biology by Sarkans, Ugis, Chiu, Wah, Collinson, Lucy, Darrow, Michele C., Ellenberg, Jan, Grunwald, David, Hériché, Jean-Karim, Iudin, Andrii, Martins, Gabriel G., Meehan, Terry, Narayan, Kedar, Patwardhan, Ardan, Russell, Matthew Robert Geoffrey, Saibil, Helen R., Strambio-De-Castillia, Caterina, Swedlow, Jason R., Tischer, Christian, Uhlmann, Virginie, Verkade, Paul, Barlow, Mary, Bayraktar, Omer, Birney, Ewan, Catavitello, Cesare, Cawthorne, Christopher, Wagner-Conrad, Stephan, Duke, Elizabeth, Paul-Gilloteaux, Perrine, Gustin, Emmanuel, Harkiolaki, Maria, Kankaanpää, Pasi, Lemberger, Thomas, McEntyre, Jo, Moore, Josh, Nicholls, Andrew W., Onami, Shuichi, Parkinson, Helen, Parsons, Maddy, Romanchikova, Marina, Sofroniew, Nicholas, Swoger, Jim, Utz, Nadine, Voortman, Lenard M., Wong, Frances, Zhang, Peijun, Kleywegt, Gerard J., Brazma, Alvis

“…Bioimaging data have significant potential for reuse, but unlocking this potential requires systematic archiving of data and metadata in public databases. We…”
Get full text

Multi-view image fusion improves resolution in three-dimensional microscopy by Swoger, Jim, Verveer, Peter, Greger, Klaus, Huisken, Jan, Stelzer, Ernst H K

“…A non-blind, shift-invariant image processing technique that fuses multi-view three-dimensional image data sets into a single, high quality three-dimensional…”
Get full text

High-resolution three-dimensional imaging of large specimens with light sheet-based microscopy by Verveer, Peter J, Swoger, Jim, Stelzer, Ernst H K, Pampaloni, Francesco, Greger, Klaus, Marcello, Marco

“…We report that single (or selective) plane illumination microscopy (SPIM), combined with a new deconvolution algorithm, provides a three-dimensional spatial…”
Get full text

Assessing Gene Expression Patterns in Mouse Models to Test Hypotheses About Human Head Evolution by Rovira, Maria, Mateu, Roger, Sastre, Jaume, Robert‐Moreno, Alexandre, Swoger, Jim, Motch Perrine, Susan, Kawasaki, Kazuhiko, Sharpe, James, Richtsmeier, Joan, Martínez‐Abadías, Neus

“…Continuous fossil discoveries and recent analysis of genomic data are revealing that anatomically modern traits evolved following a complex evolutionary path…”
Get full text