Search Results - "Jiang, Huaiyang"

Finding the missing honey bee genes: lessons learned from a genome upgrade by Elsik, Christine G, Worley, Kim C, Bennett, Anna K, Beye, Martin, Camara, Francisco, Childers, Christopher P, de Graaf, Dirk C, Debyser, Griet, Deng, Jixin, Devreese, Bart, Elhaik, Eran, Evans, Jay D, Foster, Leonard J, Graur, Dan, Guigo, Roderic, Hoff, Katharina Jasmin, Holder, Michael E, Hudson, Matthew E, Hunt, Greg J, Jiang, Huaiyang, Joshi, Vandita, Khetani, Radhika S, Kosarev, Peter, Kovar, Christie L, Ma, Jian, Maleszka, Ryszard, Moritz, Robin F A, Munoz-Torres, Monica C, Murphy, Terence D, Muzny, Donna M, Newsham, Irene F, Reese, Justin T, Robertson, Hugh M, Robinson, Gene E, Rueppell, Olav, Solovyev, Victor, Stanke, Mario, Stolle, Eckart, Tsuruda, Jennifer M, Vaerenbergh, Matthias Van, Waterhouse, Robert M, Weaver, Daniel B, Whitfield, Charles W, Wu, Yuanqing, Zdobnov, Evgeny M, Zhang, Lan, Zhu, Dianhui, Gibbs, Richard A

“…The first generation of genome sequence assemblies and annotations have had a significant impact upon our understanding of the biology of the sequenced…”
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A high-resolution X chromosome copy-number variation map in fertile females and women with primary ovarian insufficiency by Yatsenko, Svetlana A., Wood-Trageser, Michelle, Chu, Tianjiao, Jiang, Huaiyang, Rajkovic, Aleksandar

“…Purpose Sex-biased expression of genes on the X chromosome is accomplished by a complex mechanism of dosage regulation that leads to anatomical and…”
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Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds by Gibbs, Richard A, Taylor, Jeremy F, Van Tassell, Curtis P, Barendse, William, Eversole, Kellye A, Gill, Clare A, Green, Ronnie D, Hamernik, Debora L, Kappes, Steven M, Lien, Sigbjørn, Matukumalli, Lakshmi K, McEwan, John C, Nazareth, Lynne V, Schnabel, Robert D, Weinstock, George M, Wheeler, David A, Ajmone-Marsan, Paolo, Boettcher, Paul J, Caetano, Alexandre R, Garcia, Jose Fernando, Hanotte, Olivier, Mariani, Paola, Skow, Loren C, Sonstegard, Tad S, Williams, John L, Diallo, Boubacar, Hailemariam, Lemecha, Martinez, Mario L, Morris, Chris A, Silva, Luiz O C, Spelman, Richard J, Mulatu, Woudyalew, Zhao, Keyan, Abbey, Colette A, Agaba, Morris, Araujo, Flábio R, Bunch, Rowan J, Burton, James, Gorni, Chiara, Olivier, Hanotte, Harrison, Blair E, Luff, Bill, Machado, Marco A, Mwakaya, Joel, Plastow, Graham, Sim, Warren, Smith, Timothy, Thomas, Merle B, Valentini, Alessio, Williams, Paul, Womack, James, Woolliams, John A, Liu, Yue, Qin, Xiang, Worley, Kim C, Gao, Chuan, Jiang, Huaiyang, Moore, Stephen S, Ren, Yanru, Song, Xing-Zhi, Bustamante, Carlos D, Hernandez, Ryan D, Muzny, Donna M, Patil, Shobha, San Lucas, Anthony, Fu, Qing, Kent, Matthew P, Vega, Richard, Matukumalli, Aruna, McWilliam, Sean, Sclep, Gert, Bryc, Katarzyna, Choi, Jungwoo, Gao, Hong, Grefenstette, John J, Murdoch, Brenda, Stella, Alessandra, Villa-Angulo, Rafael, Wright, Mark, Aerts, Jan, Jann, Oliver, Negrini, Riccardo, Goddard, Mike E, Hayes, Ben J, Bradley, Daniel G, Barbosa da Silva, Marcos, Lau, Lilian P L, Liu, George E, Lynn, David J, Panzitta, Francesca, Dodds, Ken G

“…The imprints of domestication and breed development on the genomes of livestock likely differ from those of companion animals. A deep draft sequence assembly…”
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Comparative validation of the D. melanogaster modENCODE transcriptome annotation by Chen, Zhen-Xia, Sturgill, David, Qu, Jiaxin, Jiang, Huaiyang, Park, Soo, Boley, Nathan, Suzuki, Ana Maria, Fletcher, Anthony R, Plachetzki, David C, FitzGerald, Peter C, Artieri, Carlo G, Atallah, Joel, Barmina, Olga, Brown, James B, Blankenburg, Kerstin P, Clough, Emily, Dasgupta, Abhijit, Gubbala, Sai, Han, Yi, Jayaseelan, Joy C, Kalra, Divya, Kim, Yoo-Ah, Kovar, Christie L, Lee, Sandra L, Li, Mingmei, Malley, James D, Malone, John H, Mathew, Tittu, Mattiuzzo, Nicolas R, Munidasa, Mala, Muzny, Donna M, Ongeri, Fiona, Perales, Lora, Przytycka, Teresa M, Pu, Ling-Ling, Robinson, Garrett, Thornton, Rebecca L, Saada, Nehad, Scherer, Steven E, Smith, Harold E, Vinson, Charles, Warner, Crystal B, Worley, Kim C, Wu, Yuan-Qing, Zou, Xiaoyan, Cherbas, Peter, Kellis, Manolis, Eisen, Michael B, Piano, Fabio, Kionte, Karin, Fitch, David H, Sternberg, Paul W, Cutter, Asher D, Duff, Michael O, Hoskins, Roger A, Graveley, Brenton R, Gibbs, Richard A, Bickel, Peter J, Kopp, Artyom, Carninci, Piero, Celniker, Susan E, Oliver, Brian, Richards, Stephen

“…Accurate gene model annotation of reference genomes is critical for making them useful. The modENCODE project has improved the D. melanogaster genome…”
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Bos taurus genome assembly by Liu, Yue, Qin, Xiang, Song, Xing-Zhi Henry, Jiang, Huaiyang, Shen, Yufeng, Durbin, K James, Lien, Sigbjørn, Kent, Matthew Peter, Sodeland, Marte, Ren, Yanru, Zhang, Lan, Sodergren, Erica, Havlak, Paul, Worley, Kim C, Weinstock, George M, Gibbs, Richard A

“…We present here the assembly of the bovine genome. The assembly method combines the BAC plus WGS local assembly used for the rat and sea urchin with the whole…”
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Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF by Bourgogne, Agathe, Garsin, Danielle A, Qin, Xiang, Singh, Kavindra V, Sillanpaa, Jouko, Yerrapragada, Shailaja, Ding, Yan, Dugan-Rocha, Shannon, Buhay, Christian, Shen, Hua, Chen, Guan, Williams, Gabrielle, Muzny, Donna, Maadani, Arash, Fox, Kristina A, Gioia, Jason, Chen, Lei, Shang, Yue, Arias, Cesar A, Nallapareddy, Sreedhar R, Zhao, Meng, Prakash, Vittal P, Chowdhury, Shahreen, Jiang, Huaiyang, Gibbs, Richard A, Murray, Barbara E, Highlander, Sarah K, Weinstock, George M

“…Enterococcus faecalis has emerged as a major hospital pathogen. To explore its diversity, we sequenced E. faecalis strain OG1RF, which is commonly used for…”
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Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus by Highlander, Sarah K, Hultén, Kristina G, Qin, Xiang, Jiang, Huaiyang, Yerrapragada, Shailaja, Mason, Jr, Edward O, Shang, Yue, Williams, Tiffany M, Fortunov, Régine M, Liu, Yamei, Igboeli, Okezie, Petrosino, Joseph, Tirumalai, Madhan, Uzman, Akif, Fox, George E, Cardenas, Ana Maria, Muzny, Donna M, Hemphill, Lisa, Ding, Yan, Dugan, Shannon, Blyth, Peter R, Buhay, Christian J, Dinh, Huyen H, Hawes, Alicia C, Holder, Michael, Kovar, Christie L, Lee, Sandra L, Liu, Wen, Nazareth, Lynne V, Wang, Qiaoyan, Zhou, Jianling, Kaplan, Sheldon L, Weinstock, George M

“…Community acquired (CA) methicillin-resistant Staphylococcus aureus (MRSA) increasingly causes disease worldwide. USA300 has emerged as the predominant clone…”
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Complete Genome Sequence of Rickettsia typhi and Comparison with Sequences of Other Rickettsiae by MCLEOD, Michael P, XIANG QIN, HAWES, Alicia C, SODERGREN, Erica, GILL, Rachel, HUME, Jennifer, MORGAN, Maggie, GUANGWEI FAN, AMIN, Anita G, GIBBS, Richard A, CHAO HONG, YU, Xue-Jie, KARPATHY, Sandor E, WALKER, David H, WEINSTOCK, George M, GIOIA, Jason, HIGHLANDER, Sarah K, FOX, George E, MCNEILL, Thomas Z, HUAIYANG JIANG, MUZNY, Donna, JACOB, Leni S

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Chromosome Rearrangement and Diversification of Francisella tularensis Revealed by the Type B (OSU18) Genome Sequence by PETROSINO, Joseph F, QIN XIANG, UZMAN, Akif, FOX, George E, HIGHLANDER, Sarah, REICHARD, Mason, MORTON, Rebecca J, CLINKENBEARD, Kenneth D, WEINSTOCK, George M, KARPATHY, Sandor E, HUAIYANG JIANG, YERRAPRAGADA, Shailaja, YAMEI LIU, GIOIA, Jason, HEMPHILL, Lisa, GONZALEZ, Arely, RAGHAVAN, T. M

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The Genome Sequence of Mannheimia haemolytica A1: Insights into Virulence, Natural Competence, and Pasteurellaceae Phylogeny by GIOIA, Jason, XIANG QIN, HEMPHILL, Lisa, SODERGREN, Erica, QIAOYAN WANG, MUZNY, Donna M, HOMSI, Farah J, WEINSTOCK, George M, HIGHLANDER, Sarah K, HUAIYANG JIANG, CLINKENBEARD, Kenneth, LO, Reggie, YAMEI LIU, FOX, George E, YERRAPRAGADA, Shailaja, MCLEOD, Michael P, MCNEILL, Thomas Z

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Genome sequence of Fusobacterium nucleatum subspecies polymorphum - a genetically tractable fusobacterium by Karpathy, Sandor E, Qin, Xiang, Gioia, Jason, Jiang, Huaiyang, Liu, Yamei, Petrosino, Joseph F, Yerrapragada, Shailaja, Fox, George E, Haake, Susan Kinder, Weinstock, George M, Highlander, Sarah K

“…Fusobacterium nucleatum is a prominent member of the oral microbiota and is a common cause of human infection. F. nucleatum includes five subspecies:…”
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Community annotation: Procedures, protocols, and supporting tools: Table 1 by Elsik, Christine G., Worley, Kim C., Zhang, Lan, Milshina, Natalia V., Jiang, Huaiyang, Reese, Justin T., Childs, Kevin L., Venkatraman, Anand, Dickens, C. Michael, Weinstock, George M., Gibbs, Richard A.

“…Investigators at the Baylor College of Medicine Human Genome Sequencing Center (BCM–HGSC) and BeeBase organized a community-wide effort to manually annotate…”
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Gene variants identified by whole-exome sequencing in 33 French women with premature ovarian insufficiency by Yang, Xiang, Touraine, Philippe, Desai, Swapna, Humphreys, Gregory, Jiang, Huaiyang, Yatsenko, Alexander, Rajkovic, Aleksandar

“…Purpose To investigate the potential genetic etiology of premature ovarian insufficiency (POI). Methods Whole-exome sequencing (WES) was done on DNA samples…”
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Importance of complete phenotyping in prenatal whole exome sequencing by Aarabi, Mahmoud, Sniezek, Olivia, Jiang, Huaiyang, Saller, Devereux N., Bellissimo, Daniel, Yatsenko, Svetlana A., Rajkovic, Aleksandar

“…Whole exome sequencing (WES) is an emerging technique in prenatal diagnosis. In this retrospective study, we examined diagnostic utility and limitations of WES…”
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MCM8 and MCM9 Nucleotide Variants in Women with Primary Ovarian Insufficiency by Desai, Swapna, Wood-Trageser, Michelle, Matic, Jelena, Chipkin, Jaqueline, Jiang, Huaiyang, Bachelot, Anne, Dulon, Jerome, Sala, Cinzia, Barbieri, Caterina, Cocca, Massimiliano, Toniolo, Daniela, Philippe, Touraine, Witchel, Selma, Rajkovic, Aleksandar

“…Objective: To assess the frequency of variants, including biallelic pathogenic variants, in MCM8 and MCM9, other genes related to MCM8/9 and DNA damage repair…”
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Exome sequencing reveals MCM8 mutation underlies ovarian failure and chromosomal instability by AlAsiri, Saleh, Basit, Sulman, Wood-Trageser, Michelle A, Yatsenko, Svetlana A, Jeffries, Elizabeth P, Surti, Urvashi, Ketterer, Deborah M, Afzal, Sibtain, Ramzan, Khushnooda, Faiyaz-Ul Haque, Muhammad, Jiang, Huaiyang, Trakselis, Michael A, Rajkovic, Aleksandar

“…Premature ovarian failure (POF) is a genetically and phenotypically heterogeneous disorder that includes individuals with manifestations ranging from primary…”
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MCM9 Mutations Are Associated with Ovarian Failure, Short Stature, and Chromosomal Instability by Wood-Trageser, Michelle A., Gurbuz, Fatih, Yatsenko, Svetlana A., Jeffries, Elizabeth P., Kotan, L. Damla, Surti, Urvashi, Ketterer, Deborah M., Matic, Jelena, Chipkin, Jacqueline, Jiang, Huaiyang, Trakselis, Michael A., Topaloglu, A. Kemal, Rajkovic, Aleksandar

“…Premature ovarian failure (POF) is genetically heterogeneous and manifests as hypergonadotropic hypogonadism either as part of a syndrome or in isolation. We…”
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X-linked ADGRG2 mutation and obstructive azoospermia in a large Pakistani family by Khan, Muhammad Jaseem, Pollock, Nijole, Jiang, Huaiyang, Castro, Carlos, Nazli, Rubina, Ahmed, Jawad, Basit, Sulman, Rajkovic, Aleksandar, Yatsenko, Alexander N.

“…We performed whole exome sequencing to identify an unknown genetic cause of azoospermia and male infertility in a large Pakistani family. Three infertile males…”
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species by Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton, Baranay, Paul, Bechner, Michael, Birol, Inanç, Boisvert, Sébastien, Chapman, Jarrod A, Chapuis, Guillaume, Chikhi, Rayan, Chitsaz, Hamidreza, Chou, Wen-Chi, Corbeil, Jacques, Del Fabbro, Cristian, Docking, T Roderick, Durbin, Richard, Earl, Dent, Emrich, Scott, Fedotov, Pavel, Fonseca, Nuno A, Ganapathy, Ganeshkumar, Gibbs, Richard A, Gnerre, Sante, Godzaridis, Elénie, Goldstein, Steve, Haimel, Matthias, Hall, Giles, Haussler, David, Hiatt, Joseph B, Ho, Isaac Y, Howard, Jason, Hunt, Martin, Jackman, Shaun D, Jaffe, David B, Jarvis, Erich D, Jiang, Huaiyang, Kazakov, Sergey, Kersey, Paul J, Kitzman, Jacob O, Knight, James R, Koren, Sergey, Lam, Tak-Wah, Lavenier, Dominique, Laviolette, François, Li, Yingrui, Li, Zhenyu, Liu, Binghang, Liu, Yue, Luo, Ruibang, Maccallum, Iain, Macmanes, Matthew D, Maillet, Nicolas, Melnikov, Sergey, Naquin, Delphine, Ning, Zemin, Otto, Thomas D, Paten, Benedict, Paulo, Octávio S, Phillippy, Adam M, Pina-Martins, Francisco, Place, Michael, Przybylski, Dariusz, Qin, Xiang, Qu, Carson, Ribeiro, Filipe J, Richards, Stephen, Rokhsar, Daniel S, Ruby, J Graham, Scalabrin, Simone, Schatz, Michael C, Schwartz, David C, Sergushichev, Alexey, Sharpe, Ted, Shaw, Timothy I, Shendure, Jay, Shi, Yujian, Simpson, Jared T, Song, Henry, Tsarev, Fedor, Vezzi, Francesco, Vicedomini, Riccardo, Vieira, Bruno M, Wang, Jun, Worley, Kim C, Yin, Shuangye, Yiu, Siu-Ming, Yuan, Jianying, Zhang, Guojie, Zhang, Hao, Zhou, Shiguo, Korf, Ian F

“…The process of generating raw genome sequence data continues to become cheaper, faster, and more accurate. However, assembly of such data into high-quality,…”
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Genomic Signatures of Cooperation and Conflict in the Social Amoeba by Ostrowski, Elizabeth A., Shen, Yufeng, Tian, Xiangjun, Sucgang, Richard, Jiang, Huaiyang, Qu, Jiaxin, Katoh-Kurasawa, Mariko, Brock, Debra A., Dinh, Christopher, Lara-Garduno, Fremiet, Lee, Sandra L., Kovar, Christie L., Dinh, Huyen H., Korchina, Viktoriya, Jackson, LaRonda, Patil, Shobha, Han, Yi, Chaboub, Lesley, Shaulsky, Gad, Muzny, Donna M., Worley, Kim C., Gibbs, Richard A., Richards, Stephen, Kuspa, Adam, Strassmann, Joan E., Queller, David C.

“…Cooperative systems are susceptible to invasion by selfish individuals that profit from receiving the social benefits but fail to contribute. These so-called…”
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