Search Results - "Jernej Pavšič"

International Comparison of Enumeration-Based Quantification of DNA Copy-Concentration Using Flow Cytometric Counting and Digital Polymerase Chain Reaction by Yoo, Hee-Bong, Park, Sang-Ryoul, Dong, Lianhua, Wang, Jing, Sui, Zhiwei, Pavšič, Jernej, Milavec, Mojca, Akgoz, Muslum, Mozioğlu, Erkan, Corbisier, Philippe, Janka, Mátrai, Cosme, Bruno, de V. Cavalcante, Janaina J, Flatshart, Roberto Becht, Burke, Daniel, Forbes-Smith, Michael, McLaughlin, Jacob, Emslie, Kerry, Whale, Alexandra S, Huggett, Jim F, Parkes, Helen, Kline, Margaret C, Harenza, Jo Lynne, Vallone, Peter M

“…Enumeration-based determination of DNA copy-concentration was assessed through an international comparison among national metrology institutes (NMIs) and…”
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Inter-laboratory assessment of different digital PCR platforms for quantification of human cytomegalovirus DNA by Pavšič, Jernej, Devonshire, Alison, Blejec, Andrej, Foy, Carole A., Van Heuverswyn, Fran, Jones, Gerwyn M., Schimmel, Heinz, Žel, Jana, Huggett, Jim F., Redshaw, Nicholas, Karczmarczyk, Maria, Mozioğlu, Erkan, Akyürek, Sema, Akgöz, Müslüm, Milavec, Mojca

“…Quantitative PCR (qPCR) is an important tool in pathogen detection. However, the use of different qPCR components, calibration materials and DNA extraction…”
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Assessment of Digital PCR as a Primary Reference Measurement Procedure to Support Advances in Precision Medicine by Whale, Alexandra S, Jones, Gerwyn M, Pavšič, Jernej, Dreo, Tanja, Redshaw, Nicholas, Akyürek, Sema, Akgöz, Müslüm, Divieto, Carla, Sassi, Maria Paola, He, Hua-Jun, Cole, Kenneth D, Bae, Young-Kyung, Park, Sang-Ryoul, Deprez, Liesbet, Corbisier, Philippe, Garrigou, Sonia, Taly, Valérie, Larios, Raquel, Cowen, Simon, O'Sullivan, Denise M, Bushell, Claire A, Goenaga-Infante, Heidi, Foy, Carole A, Woolford, Alison J, Parkes, Helen, Huggett, Jim F, Devonshire, Alison S

“…Genetic testing of tumor tissue and circulating cell-free DNA for somatic variants guides patient treatment of many cancers. Such measurements will be…”
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The performance of human cytomegalovirus digital PCR reference measurement procedure in seven external quality assessment schemes over four years by Milavec, Mojca, Pavšič, Jernej, Bogožalec Košir, Alexandra, Jones, Gerwyn M., O'Sullivan, Denise M., Devonshire, Alison S., Van Heuverswyn, Fran, Karczmarczyk, Maria, Neeb, Jannika, Plauth, Annabell, Corbisier, Philippe, Schimmel, Heinz, Kummrow, Andreas, Neukammer, Jörg, Foy, Carole A., Kammel, Martin, Grunert, Hans-Peter, Zeichhardt, Heinz, Huggett, Jim F.

“…•dPCR protocol investigated measuring hCMV whole virus panels over four years.•First reference measurement procedure for human pathogenic DNA virus…”
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Standardization of Nucleic Acid Tests for Clinical Measurements of Bacteria and Viruses by Pavšič, Jernej, Devonshire, Alison S, Parkes, Helen, Schimmel, Heinz, Foy, Carole A, Karczmarczyk, Maria, Gutiérrez-Aguirre, Ion, Honeyborne, Isobella, Huggett, Jim F, McHugh, Timothy D, Milavec, Mojca, Zeichhardt, Heinz, Žel, Jana

“…Nucleic acid-based tests for infectious diseases currently used in the clinical laboratory and in point-of-care devices are diverse. Measurement challenges…”
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The use of digital PCR to improve the application of quantitative molecular diagnostic methods for tuberculosis by Devonshire, Alison S, O'Sullivan, Denise M, Honeyborne, Isobella, Jones, Gerwyn, Karczmarczyk, Maria, Pavšič, Jernej, Gutteridge, Alice, Milavec, Mojca, Mendoza, Pablo, Schimmel, Heinz, Van Heuverswyn, Fran, Gorton, Rebecca, Cirillo, Daniela Maria, Borroni, Emanuele, Harris, Kathryn, Barnard, Marinus, Heydenrych, Anthenette, Ndusilo, Norah, Wallis, Carole L, Pillay, Keshree, Barry, Thomas, Reddington, Kate, Richter, Elvira, Mozioğlu, Erkan, Akyürek, Sema, Yalçınkaya, Burhanettin, Akgoz, Muslum, Žel, Jana, Foy, Carole A, McHugh, Timothy D, Huggett, Jim F

“…Real-time PCR (qPCR) based methods, such as the Xpert MTB/RIF, are increasingly being used to diagnose tuberculosis (TB). While qualitative methods are…”
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Assessment of the real-time PCR and different digital PCR platforms for DNA quantification by Pavšič, Jernej, Žel, Jana, Milavec, Mojca

“…Digital PCR (dPCR) is beginning to supersede real-time PCR (qPCR) for quantification of nucleic acids in many different applications. Several analytical…”
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Optimising droplet digital PCR analysis approaches for detection and quantification of bacteria: a case study of fire blight and potato brown rot by Dreo, Tanja, Pirc, Manca, Ramšak, Živa, Pavšič, Jernej, Milavec, Mojca, Žel, Jana, Gruden, Kristina

“…Here we report on the first assessment of droplet digital PCR (ddPCR) for detection and absolute quantification of two quarantine plant pathogenic bacteria…”
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Droplet volume variability as a critical factor for accuracy of absolute quantification using droplet digital PCR by Košir, Alexandra Bogožalec, Divieto, Carla, Pavšič, Jernej, Pavarelli, Stefano, Dobnik, David, Dreo, Tanja, Bellotti, Roberto, Sassi, Maria Paola, Žel, Jana

“…Accurate and precise nucleic-acid quantification is crucial for clinical and diagnostic decisions, as overestimation or underestimation can lead to misguided…”
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Digital PCR for direct quantification of viruses without DNA extraction by Pavšič, Jernej, Žel, Jana, Milavec, Mojca

“…DNA extraction before amplification is considered an essential step for quantification of viral DNA using real-time PCR (qPCR). However, this can directly…”
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Upper Campanian bentonite layers in the Scaglia-type limestone of the northern Dinarides (SE Slovenia) by Gerčar, David, Zupančič, Nina, Waśkowska, Anna, Pavšič, Jernej, Rožič, Boštjan

“…The research area is located in south-eastern Slovenia and belongs to the eastern extensions of the Slovenian Basin adjacent to the Adriatic Carbonate…”
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Miocene pteropods from Polički Vrh in Slovenske gorice, northeast Slovenia by Aleksander Horvat, Miloš Bartol, Rok Gašparič, Vasja Mikuž, Jernej Pavšič

“…In the paper relatively modestly preserved but very numerous pteropod remains from Middle Miocene – Badenianmicaceous marlstones of Poli~ki Vrh locality in…”
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Triassic and Jurassic beds in Krim Mountain area (Slovenia) by Miloš Miler, Jernej Pavšič

“…The Krim Mountain and its surroundings are characterized by Upper Triassic to Middle Jurassic rocks, which were deposited on the northern margin of the Dinaric…”
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Molecular diversity of ‘Candidatus Phytoplasma pyri’ isolates in Slovenia by Jernej, Pavšič, Nataša, Mehle, Petra, Nikolić, Marina, Dermastia

“…A European quarantine organism ‘Candidatus Phytoplasma pyri’ causing devastating pear decline disease has been reported to affect pear trees in several…”
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Badenian discoasters from the section in Lenart (Northeast Slovenia, Central Paratethys) by Miloš Bartol, Jernej Pavšič

“…In Slovenske gorice, south of Lenart, a 20 m profile of Middle Miocene strata has been exposed. During previous research numerous discoasters have been found…”
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Oligocene sawfish from Breg near Čeplje, Slovenia by Vasja Mikuž, Jernej Pavšič

“…In paper a 168 mm long rostral tooth of a cartilaginous fish – sawfish from Breg near Čeplje is decsribed. In its proximal part the tooth is thick and broad,…”
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Unusual Braarudosphaera bigelowii and Micrantholithus vesper enrichment in the Early Miocene sediments from the Slovenian Corridor, a seaway linking the Central Paratethys and the Mediterranean by Bartol, Miloš, Pavšič, Jernej, Dobnikar, Meta, Bernasconi, Stefano M.

“…During a stratigraphic survey of an Early Miocene sedimentary sequence outcropping in SE Slovenia an unusual enrichment of the calcareous nannoplankton…”
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Lower Eocene on Majevica north of Tuzla (NE Bosnia) by Jernej Pavšič, Rajko Pavlovec, Sejfudin Vrabac

“…In Lower Eocene marlstones on Mt. Majevica in northeastern Bosnia species Nummulites atacicus and N. robustus were determined, the latter first found on the…”
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Cypraea in Miocene bryoide from surroundings of Mlinše near Izlake, Slovenia by Vasja Mikuž, Jernej Pavšič

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The Paleocene-Eocene boundary in a flysch sequence from Goriška Brda (Western Slovenia): Oxygen and carbon stable isotope variations by Tadej Dolenec, Jernej Pavšič, Sonja Lojen

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