Search Results - "Jena, Siddhartha G"

Answering open questions in biology using spatial genomics and structured methods by Jena, Siddhartha G, Verma, Archit, Engelhardt, Barbara E

“…Genomics methods have uncovered patterns in a range of biological systems, but obscure important aspects of cell behavior: the shapes, relative locations,…”
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A self-exciting point process to study multicellular spatial signaling patterns by Verma, Archit, Jena, Siddhartha G., Isakov, Danielle R., Aoki, Kazuhiro, Toettcher, Jared E., Engelhardt, Barbara E.

“…Multicellular organisms rely on spatial signaling among cells to drive their organization, development, and response to stimuli. Several models have been…”
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Roadmap on biology in time varying environments by Murugan, Arvind, Husain, Kabir, Rust, Michael J, Hepler, Chelsea, Bass, Joseph, Pietsch, Julian M J, Swain, Peter S, Jena, Siddhartha G, Toettcher, Jared E, Chakraborty, Arup K, Sprenger, Kayla G, Mora, T, Walczak, A M, Rivoire, O, Wang, Shenshen, Wood, Kevin B, Skanata, Antun, Kussell, Edo, Ranganathan, Rama, Shih, Hong-Yan, Goldenfeld, Nigel

“…Biological organisms experience constantly changing environments, from sudden changes in physiology brought about by feeding, to the regular rising and setting…”
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Regulation of spatiotemporal limits of developmental gene expression via enhancer grammar by Keller, Samuel H., Jena, Siddhartha G., Yamazaki, Yuji, Lim, Bomyi

“…The regulatory specificity of a gene is determined by the structure of its enhancers, which contain multiple transcription factor binding sites. A unique…”
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A random graph model of density thresholds in swarming cells by Jena, Siddhartha G.

“…Swarming behaviour is a type of bacterial motility that has been found to be dependent on reaching a local density threshold of cells. With this in mind, the…”
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Engineering combinatorial and dynamic decoders using synthetic immediate-early genes by Ravindran, Pavithran T., Wilson, Maxwell Z., Jena, Siddhartha G., Toettcher, Jared E.

“…Many cell- and tissue-level functions are coordinated by intracellular signaling pathways that trigger the expression of context-specific target genes. Yet the…”
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Deconstructing and repurposing the light-regulated interplay between Arabidopsis phytochromes and interacting factors by Golonka, David, Fischbach, Patrick, Jena, Siddhartha G., Kleeberg, Julius R. W., Essen, Lars-Oliver, Toettcher, Jared E., Zurbriggen, Matias D., Möglich, Andreas

“…Phytochrome photoreceptors mediate adaptive responses of plants to red and far-red light. These responses generally entail light-regulated association between…”
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Deconstructing and repurposing the light-regulated interplay between Arabidopsis phytochromes and interacting factors by Golonka, David, Fischbach, Patrick, Jena, Siddhartha G, Kleeberg, Julius R W, Essen, Lars-Oliver, Toettcher, Jared E, Zurbriggen, Matias D, Möglich, Andreas

“…Phytochrome photoreceptors mediate adaptive responses of plants to red and far-red light. These responses generally entail light-regulated association between…”
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Publisher Correction: Deconstructing and repurposing the light-regulated interplay between Arabidopsis phytochromes and interacting factors by Golonka, David, Fischbach, Patrick, Jena, Siddhartha G., Kleeberg, Julius R. W., Essen, Lars-Oliver, Toettcher, Jared E., Zurbriggen, Matias D., Möglich, Andreas

“…An amendment to this paper has been published and can be accessed via a link at the top of the paper…”
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Signaling Dynamics Shape Gene Regulation across Scales by Jena, Siddhartha G

“…The comparison of cells to computing machines is cliched, perhaps, but at least somewhat accurate. Cells are under profound pressure to interpret information…”
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Publisher Correction: Deconstructing and repurposing the light-regulated interplay between Arabidopsis phytochromes and interacting factors by Golonka, David, Fischbach, Patrick, Jena, Siddhartha G., Kleeberg, Julius R. W., Essen, Lars-Oliver, Toettcher, Jared E., Zurbriggen, Matias D., Möglich, Andreas

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Erratum: Publisher Correction: Deconstructing and repurposing the light-regulated interplay between Arabidopsis phytochromes and interacting factors by Golonka, David, Fischbach, Patrick, Jena, Siddhartha G, Kleeberg, Julius R W, Essen, Lars-Oliver, Toettcher, Jared E, Zurbriggen, Matias D, Möglich, Andreas

“…[This corrects the article DOI: 10.1038/s42003-019-0687-9.]…”
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Restricted Positional Games by Avadhanam, Pranav, Jena, Siddhartha G

“…A positional game is a game where two players sequentially label vertices of a hypergraph, consisting of a board and a collection of winning sets, with colors…”
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Answering open questions in biology using spatial genomics and structured methods by Jena, Siddhartha G, Verma, Archit, Engelhardt, Barbara E

“…Genomics methods have uncovered patterns in a range of biological systems, but obscure important aspects of cell behavior: the shape, relative locations of,…”
Get full text