Search Results - "Jemma L. Geoghegan"

Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families by Geoghegan, Jemma L, Duchêne, Sebastián, Holmes, Edward C

“…The cross-species transmission of viruses from one host species to another is responsible for the majority of emerging infections. However, it is unclear…”
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How accurately can we assess zoonotic risk? by Wille, Michelle, Geoghegan, Jemma L, Holmes, Edward C

“…Identifying the animal reservoirs from which zoonotic viruses will likely emerge is central to understanding the determinants of disease emergence…”
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Predicting virus emergence amid evolutionary noise by Geoghegan, Jemma L., Holmes, Edward C.

“…The study of virus disease emergence, whether it can be predicted and how it might be prevented, has become a major research topic in biomedicine. Here we show…”
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The origins of SARS-CoV-2: A critical review by Holmes, Edward C., Goldstein, Stephen A., Rasmussen, Angela L., Robertson, David L., Crits-Christoph, Alexander, Wertheim, Joel O., Anthony, Simon J., Barclay, Wendy S., Boni, Maciej F., Doherty, Peter C., Farrar, Jeremy, Geoghegan, Jemma L., Jiang, Xiaowei, Leibowitz, Julian L., Neil, Stuart J.D., Skern, Tim, Weiss, Susan R., Worobey, Michael, Andersen, Kristian G., Garry, Robert F., Rambaut, Andrew

“…Since the first reports of a novel severe acute respiratory syndrome (SARS)-like coronavirus in December 2019 in Wuhan, China, there has been intense interest…”
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Evolutionary Virology at 40 by Geoghegan, Jemma L, Holmes, Edward C

“…RNA viruses are diverse, abundant, and rapidly evolving. Genetic data have been generated from virus populations since the late 1970s and used to understand…”
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Virological factors that increase the transmissibility of emerging human viruses by Geoghegan, Jemma L., Senior, Alistair M., Di Giallonardo, Francesca, Holmes, Edward C.

“…The early detection of pathogens with epidemic potential is of major importance to public health. Most emerging infections result in dead-end “spillover”…”
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Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 during Border Quarantine and Air Travel, New Zealand (Aotearoa) by Eichler, Nick, Thornley, Craig, Swadi, Tara, Devine, Tom, McElnay, Caroline, Sherwood, Jillian, Brunton, Cheryl, Williamson, Felicity, Freeman, Josh, Berger, Sarah, Ren, Xiaoyun, Storey, Matt, de Ligt, Joep, Geoghegan, Jemma L

“…The strategy in New Zealand (Aotearoa) to eliminate coronavirus disease requires that international arrivals undergo managed isolation and quarantine and…”
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Transcriptome Mining Expands Knowledge of RNA Viruses across the Plant Kingdom by Mifsud, Jonathon C O, Gallagher, Rachael V, Holmes, Edward C, Geoghegan, Jemma L

“…Our current understanding of plant viruses stems largely from those affecting economically important plants. Yet plant species in cultivation represent a small…”
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Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand by Geoghegan, Jemma L., Ren, Xiaoyun, Storey, Matthew, Hadfield, James, Jelley, Lauren, Jefferies, Sarah, Sherwood, Jill, Paine, Shevaun, Huang, Sue, Douglas, Jordan, Mendes, Fábio K., Sporle, Andrew, Baker, Michael G., Murdoch, David R., French, Nigel, Simpson, Colin R., Welch, David, Drummond, Alexei J., Holmes, Edward C., Duchêne, Sebastián, de Ligt, Joep

“…New Zealand, a geographically remote Pacific island with easily sealable borders, implemented a nationwide ‘lockdown’ of all non-essential services to curb the…”
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Real-Time Genomics for Tracking Severe Acute Respiratory Syndrome Coronavirus 2 Border Incursions after Virus Elimination, New Zealand by Douglas, Jordan, Geoghegan, Jemma L, Hadfield, James, Bouckaert, Remco, Storey, Matthew, Ren, Xiaoyun, de Ligt, Joep, French, Nigel, Welch, David

“…Since severe acute respiratory syndrome coronavirus 2 was first eliminated in New Zealand in May 2020, a total of 13 known coronavirus disease (COVID-19)…”
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Exploring the depth and breadth of the genomics toolbox during the COVID-19 pandemic: insights from Aotearoa New Zealand by Bunce, Michael, Geoghegan, Jemma L, Winter, David, de Ligt, Joep, Wiles, Siouxsie

“…Genomic technologies have become routine in the surveillance and monitoring of the coronavirus disease 2019 (COVID-19) pandemic, as evidenced by the millions…”
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Genomic epidemiology of Delta SARS-CoV-2 during transition from elimination to suppression in Aotearoa New Zealand by Jelley, Lauren, Douglas, Jordan, Ren, Xiaoyun, Winter, David, McNeill, Andrea, Huang, Sue, French, Nigel, Welch, David, Hadfield, James, de Ligt, Joep, Geoghegan, Jemma L.

“…New Zealand’s COVID-19 elimination strategy heavily relied on the use of genomics to inform contact tracing, linking cases to the border and to clusters during…”
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Airborne Transmission of SARS-CoV-2 Delta Variant within Tightly Monitored Isolation Facility, New Zealand (Aotearoa) by Fox-Lewis, Andrew, Williamson, Felicity, Harrower, Jay, Ren, Xiaoyun, Sonder, Gerard J B, McNeill, Andrea, de Ligt, Joep, Geoghegan, Jemma L

“…In New Zealand, international arrivals are quarantined and undergo severe acute respiratory syndrome coronavirus 2 screening; those who test positive are…”
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Tracing the international arrivals of SARS-CoV-2 Omicron variants after Aotearoa New Zealand reopened its border by Douglas, Jordan, Winter, David, McNeill, Andrea, Carr, Sam, Bunce, Michael, French, Nigel, Hadfield, James, de Ligt, Joep, Welch, David, Geoghegan, Jemma L.

“…In the second quarter of 2022, there was a global surge of emergent SARS-CoV-2 lineages that had a distinct growth advantage over then-dominant Omicron BA.1…”
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Genomic Evidence of In-Flight Transmission of SARS-CoV-2 Despite Predeparture Testing by Swadi, Tara, Geoghegan, Jemma L, Devine, Tom, McElnay, Caroline, Sherwood, Jillian, Shoemack, Phil, Ren, Xiaoyun, Storey, Matt, Jefferies, Sarah, Smit, Erasmus, Hadfield, James, Kenny, Aoife, Jelley, Lauren, Sporle, Andrew, McNeill, Andrea, Reynolds, G Edwin, Mouldey, Kip, Lowe, Lindsay, Sonder, Gerard, Drummond, Alexei J, Huang, Sue, Welch, David, Holmes, Edward C, French, Nigel, Simpson, Colin R, de Ligt, Joep

“…Since the first wave of coronavirus disease in March 2020, citizens and permanent residents returning to New Zealand have been required to undergo managed…”
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Use of Genomics to Track Coronavirus Disease Outbreaks, New Zealand by Geoghegan, Jemma L, Douglas, Jordan, Ren, Xiaoyun, Storey, Matthew, Hadfield, James, Silander, Olin K, Freed, Nikki E, Jelley, Lauren, Jefferies, Sarah, Sherwood, Jillian, Paine, Shevaun, Huang, Sue, Sporle, Andrew, Baker, Michael G, Murdoch, David R, Drummond, Alexei J, Welch, David, Simpson, Colin R, French, Nigel, Holmes, Edward C, de Ligt, Joep

“…Real-time genomic sequencing has played a major role in tracking the global spread of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2),…”
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A Novel Rubi-Like Virus in the Pacific Electric Ray ( Tetronarce californica ) Reveals the Complex Evolutionary History of the Matonaviridae by Grimwood, Rebecca M, Holmes, Edward C, Geoghegan, Jemma L

“…(RuV) is the causative agent of rubella ("German measles") and remains a global health concern. Until recently, RuV was the only known member of the genus and…”
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Virological Sampling of Inaccessible Wildlife with Drones by Geoghegan, Jemma L, Pirotta, Vanessa, Harvey, Erin, Smith, Alastair, Buchmann, Jan P, Ostrowski, Martin, Eden, John-Sebastian, Harcourt, Robert, Holmes, Edward C

“…There is growing interest in characterizing the viromes of diverse mammalian species, particularly in the context of disease emergence. However, little is…”
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Divergent Influenza-Like Viruses of Amphibians and Fish Support an Ancient Evolutionary Association by Parry, Rhys, Wille, Michelle, Turnbull, Olivia M H, Geoghegan, Jemma L, Holmes, Edward C

“…Influenza viruses (family ) infect a variety of vertebrates, including birds, humans, and other mammals. Recent metatranscriptomic studies have uncovered…”
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Genetic Reassortment between Endemic and Introduced Macrobrachium rosenbergii Nodaviruses in the Murray-Darling Basin, Australia by Costa, Vincenzo A, Geoghegan, Jemma L, Holmes, Edward C, Harvey, Erin

“…nodavirus (MrNV)-the aetiological agent of white tail disease-is a major limiting factor of crustacean aquaculture as it causes up to 100% mortality in larvae…”
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