Search Results - "Jarman, Simon"

Blocking primers to enhance PCR amplification of rare sequences in mixed samples - a case study on prey DNA in Antarctic krill stomachs by Vestheim, Hege, Jarman, Simon N

“…Identification of DNA sequence diversity is a powerful means for assessing the species present in environmental samples. The most common molecular strategies…”
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DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match by Deagle, Bruce E., Jarman, Simon N., Coissac, Eric, Pompanon, François, Taberlet, Pierre

“…DNA metabarcoding enables efficient characterization of species composition in environmental DNA or bulk biodiversity samples, and this approach is making…”
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Passive eDNA collection enhances aquatic biodiversity analysis by Bessey, Cindy, Neil Jarman, Simon, Simpson, Tiffany, Miller, Haylea, Stewart, Todd, Kenneth Keesing, John, Berry, Oliver

“…Environmental DNA (eDNA) metabarcoding is a sensitive and widely used approach for species detection and biodiversity assessment. The most common eDNA…”
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Who is eating what: diet assessment using next generation sequencing by POMPANON, FRANCOIS, DEAGLE, BRUCE E., SYMONDSON, WILLIAM O. C., BROWN, DAVID S., JARMAN, SIMON N., TABERLET, PIERRE

“…The analysis of food webs and their dynamics facilitates understanding of the mechanistic processes behind community ecology and ecosystem functions. Having…”
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Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces by DEAGLE, BRUCE E., KIRKWOOD, ROGER, JARMAN, SIMON N.

“…DNA‐based techniques have proven useful for defining trophic links in a variety of ecosystems and recently developed sequencing technologies provide new…”
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Epigenetic estimation of age in humpback whales by Polanowski, Andrea M., Robbins, Jooke, Chandler, David, Jarman, Simon N.

“…Age is a fundamental aspect of animal ecology, but is difficult to determine in many species. Humpback whales exemplify this as they have a lifespan comparable…”
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Advancing the integration of multi‐marker metabarcoding data in dietary analysis of trophic generalists by Silva, Luís P., Mata, Vanessa A., Lopes, Pedro B., Pereira, Paulo, Jarman, Simon N., Lopes, Ricardo J., Beja, Pedro

“…The application of DNA metabarcoding to dietary analysis of trophic generalists requires using multiple markers in order to overcome problems of primer…”
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High occurrence of jellyfish predation by black‐browed and Campbell albatross identified by DNA metabarcoding by McInnes, Julie C., Alderman, Rachael, Lea, Mary‐Anne, Raymond, Ben, Deagle, Bruce E., Phillips, Richard A., Stanworth, Andrew, Thompson, David R., Catry, Paulo, Weimerskirch, Henri, Suazo, Cristián G., Gras, Michaël, Jarman, Simon N.

“…Gelatinous zooplankton are a large component of the animal biomass in all marine environments, but are considered to be uncommon in the diet of most marine top…”
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Adélie penguin population diet monitoring by analysis of food DNA in scats by Jarman, Simon N, McInnes, Julie C, Faux, Cassandra, Polanowski, Andrea M, Marthick, James, Deagle, Bruce E, Southwell, Colin, Emmerson, Louise

“…The Adélie penguin is the most important animal currently used for ecosystem monitoring in the Southern Ocean. The diet of this species is generally studied by…”
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The value of environmental DNA biobanking for long-term biomonitoring by Jarman, Simon N., Berry, Oliver, Bunce, Michael

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Phylogenomic Resolution of the Cetacean Tree of Life Using Target Sequence Capture by McGowen, Michael R., Tsagkogeorga, Georgia, Álvarez-Carretero, Sandra, dos Reis, Mario, Struebig, Monika, Deaville, Robert, Jepson, Paul D., Jarman, Simon, Polanowski, Andrea, Morin, Phillip A., Rossiter, Stephen J.

“…The evolution of cetaceans, fromtheir early transition to an aquatic lifestyle to their subsequent diversification, has been the subject of numerous studies…”
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How much is enough? Effects of technical and biological replication on metabarcoding dietary analysis by Mata, Vanessa A., Rebelo, Hugo, Amorim, Francisco, McCracken, Gary F., Jarman, Simon, Beja, Pedro

“…DNA metabarcoding is increasingly used in dietary studies to estimate diversity, composition and frequency of occurrence of prey items. However, few studies…”
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Environmental DNA metabarcoding studies are critically affected by substrate selection by Koziol, Adam, Stat, Michael, Simpson, Tiffany, Jarman, Simon, DiBattista, Joseph D., Harvey, Euan S., Marnane, Michael, McDonald, Justin, Bunce, Michael

“…Effective biomonitoring is critical for driving management outcomes that ensure long‐term sustainability of the marine environment. In recent years,…”
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A review of applications of environmental DNA for reptile conservation and management by Nordstrom, Bethany, Mitchell, Nicola, Byrne, Margaret, Jarman, Simon

“…Reptile populations are in decline globally, with total reptile abundance halving in the past half century, and approximately a fifth of species currently…”
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Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count? by Deagle, Bruce E., Thomas, Austen C., Shaffer, Amanda K., Trites, Andrew W., Jarman, Simon N.

“…A goal of many environmental DNA barcoding studies is to infer quantitative information about relative abundances of different taxa based on sequence read…”
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Individual haplotyping of whale sharks from seawater environmental DNA by Dugal, Laurence, Thomas, Luke, Jensen, Mads Reinholdt, Sigsgaard, Eva Egelyng, Simpson, Tiffany, Jarman, Simon, Thomsen, Philip Francis, Meekan, Mark

“…Population genetic data can provide valuable information on the demography of a species. For rare and elusive marine megafauna, samples for generating the data…”
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Calibrating epigenetic clocks with training data error by Mayne, Benjamin, Berry, Oliver, Jarman, Simon

“…Animal age data are valuable for management of wildlife populations. Yet, for most species, there is no practical method for determining the age of unknown…”
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Improving accuracy of DNA diet estimates using food tissue control materials and an evaluation of proxies for digestion bias by Thomas, Austen C, Jarman, Simon N, Haman, Katherine H, Trites, Andrew W, Deagle, Bruce E

“…Ecologists are increasingly interested in quantifying consumer diets based on food DNA in dietary samples and high‐throughput sequencing of marker genes. It is…”
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Pyrosequencing faecal DNA to determine diet of little penguins: is what goes in what comes out? by Deagle, Bruce E., Chiaradia, André, McInnes, Julie, Jarman, Simon N.

“…DNA barcoding of faeces or stomach contents is an emerging approach for dietary analysis. We pyrosequenced mtDNA 16S markers amplified from faeces of captive…”
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Quantification of damage in DNA recovered from highly degraded samples--a case study on DNA in faeces by Deagle, Bruce E, Eveson, J Paige, Jarman, Simon N

“…Poorly preserved biological tissues have become an important source of DNA for a wide range of zoological studies. Measuring the quality of DNA obtained from…”
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