Search Results - "Jansen, Hans J."

Scaffolding pre-assembled contigs using SSPACE by BOETZER, Marten, HENKEL, Christiaan V, JANSEN, Hans J, BUTLER, Derek, PIROVANO, Walter

“…De novo assembly tools play a main role in reconstructing genomes from next-generation sequencing (NGS) data and usually yield a number of contigs. Using…”
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RNAseq Profiling of Leukocyte Populations in Zebrafish Larvae Reveals a cxcl11 Chemokine Gene as a Marker of Macrophage Polarization During Mycobacterial Infection by Rougeot, Julien, Torraca, Vincenzo, Zakrzewska, Ania, Kanwal, Zakia, Jansen, Hans J, Sommer, Frida, Spaink, Herman P, Meijer, Annemarie H

“…Macrophages are phagocytic cells from the innate immune system, which forms the first line of host defense against invading pathogens. These highly dynamic…”
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Primitive duplicate Hox clusters in the European eel's genome by Henkel, Christiaan V, Burgerhout, Erik, de Wijze, Daniëlle L, Dirks, Ron P, Minegishi, Yuki, Jansen, Hans J, Spaink, Herman P, Dufour, Sylvie, Weltzien, Finn-Arne, Tsukamoto, Katsumi, van den Thillart, Guido E E J M

“…The enigmatic life cycle and elongated body of the European eel (Anguilla anguilla L., 1758) have long motivated scientific enquiry. Recently, eel research has…”
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Testing tuberculosis drug efficacy in a zebrafish high-throughput translational medicine screen by Ordas, Anita, Raterink, Robert-Jan, Cunningham, Fraser, Jansen, Hans J, Wiweger, Malgorzata I, Jong-Raadsen, Susanne, Bos, Sabine, Bates, Robert H, Barros, David, Meijer, Annemarie H, Vreeken, Rob J, Ballell-Pages, Lluís, Dirks, Ron P, Hankemeier, Thomas, Spaink, Herman P

“…The translational value of zebrafish high-throughput screens can be improved when more knowledge is available on uptake characteristics of potential drugs. We…”
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MinION Analysis and Reference Consortium: Phase 1 data release and analysis by Ip, Camilla L C, Loose, Matthew, Tyson, John R, de Cesare, Mariateresa, Brown, Bonnie L, Jain, Miten, Leggett, Richard M, Eccles, David A, Zalunin, Vadim, Urban, John M, Piazza, Paolo, Bowden, Rory J, Paten, Benedict, Mwaigwisya, Solomon, Batty, Elizabeth M, Simpson, Jared T, Snutch, Terrance P, Birney, Ewan, Buck, David, Goodwin, Sara, Jansen, Hans J, O'Grady, Justin, Olsen, Hugh E

“…The advent of a miniaturized DNA sequencing device with a high-throughput contextual sequencing capability embodies the next generation of large scale…”
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Genome and transcriptome analysis of the beet armyworm Spodoptera exigua reveals targets for pest control by Simon, Sabrina, Breeschoten, Thijmen, Jansen, Hans J, Dirks, Ron P, Schranz, M Eric, Ros, Vera I D

“…The genus Spodoptera (Lepidoptera: Noctuidae) includes some of the most infamous insect pests of cultivated plants including Spodoptera frugiperda, Spodoptera…”
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MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry [version 1; peer review: 1 approved, 2 approved with reservations] by Jain, Miten, Tyson, John R, Loose, Matthew, Ip, Camilla L.C, Eccles, David A, O'Grady, Justin, Malla, Sunir, Leggett, Richard M, Wallerman, Ola, Jansen, Hans J, Zalunin, Vadim, Birney, Ewan, Brown, Bonnie L, Snutch, Terrance P, Olsen, Hugh E

“…Background: Long-read sequencing is rapidly evolving and reshaping the suite of opportunities for genomic analysis. For the MinION in particular, as both the…”
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Deep RNA sequencing of the skeletal muscle transcriptome in swimming fish by Palstra, Arjan P, Beltran, Sergi, Burgerhout, Erik, Brittijn, Sebastiaan A, Magnoni, Leonardo J, Henkel, Christiaan V, Jansen, Hans J, van den Thillart, Guido E E J M, Spaink, Herman P, Planas, Josep V

“…Deep RNA sequencing (RNA-seq) was performed to provide an in-depth view of the transcriptome of red and white skeletal muscle of exercised and non-exercised…”
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The Rauvolfia tetraphylla genome suggests multiple distinct biosynthetic routes for yohimbane monoterpene indole alkaloids by Stander, Emily Amor, Lehka, Beata, Carqueijeiro, Inês, Cuello, Clément, Hansson, Frederik G., Jansen, Hans J., Dugé De Bernonville, Thomas, Birer Williams, Caroline, Vergès, Valentin, Lezin, Enzo, Lorensen, Marcus Daniel Brandbjerg Bohn, Dang, Thu-Thuy, Oudin, Audrey, Lanoue, Arnaud, Durand, Mickael, Giglioli-Guivarc’h, Nathalie, Janfelt, Christian, Papon, Nicolas, Dirks, Ron P., O’connor, Sarah Ellen, Jensen, Michael Krogh, Besseau, Sébastien, Courdavault, Vincent

“…Monoterpene indole alkaloids (MIAs) are a structurally diverse family of specialized metabolites mainly produced in Gentianales to cope with environmental…”
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The Human Pathogen Mycobacterium tuberculosis and the Fish Pathogen Mycobacterium marinum Trigger a Core Set of Late Innate Immune Response Genes in Zebrafish Larvae by Dirks, Ron P, Ordas, Anita, Jong-Raadsen, Susanne, Brittijn, Sebastiaan A, Haks, Mariëlle C, Henkel, Christiaan V, Oravcova, Katarina, Racz, Peter I, Tuinhof-Koelma, Nynke, Korzeniowska Nee Wiweger, Malgorzata I, Gillespie, Stephen H, Meijer, Annemarie H, Ottenhoff, Tom H M, Jansen, Hans J, Spaink, Herman P

“…Zebrafish is a natural host of various species and a surrogate model organism for tuberculosis research. is evolutionarily one of the closest non-tuberculous…”
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The Madagascar palm genome provides new insights on the evolution of Apocynaceae specialized metabolism by Cuello, Clément, Jansen, Hans J., Abdallah, Cécile, Zamar Mbadinga, Duchesse-Lacours, Birer Williams, Caroline, Durand, Mickael, Oudin, Audrey, Papon, Nicolas, Giglioli-Guivarc'h, Nathalie, Dirks, Ron P., Jensen, Michael Krogh, O'Connor, Sarah Ellen, Besseau, Sébastien, Courdavault, Vincent

“…Specialized metabolites possess diverse interesting biological activities and some cardenolides- and monoterpene indole alkaloids- (MIAs) derived…”
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Corrigendum: RNAseq Profiling of Leukocyte Populations in Zebrafish Larvae Reveals a cxcl11 Chemokine Gene as a Marker of Macrophage Polarization During Mycobacterial Infection by Rougeot, Julien, Torraca, Vincenzo, Zakrzewska, Ania, Kanwal, Zakia, Jansen, Hans J, Sommer, Frida, Spaink, Herman P, Meijer, Annemarie H

“…[This corrects the article DOI: 10.3389/fimmu.2019.00832.]…”
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Changes in ovarian gene expression profiles and plasma hormone levels in maturing European eel ( Anguilla anguilla ); Biomarkers for broodstock selection by Burgerhout, Erik, Minegishi, Yuki, Brittijn, Sebastiaan A, de Wijze, Danielle L, Henkel, Christiaan V, Jansen, Hans J, Spaink, Herman P, Dirks, Ron P, van den Thillart, Guido E.E.J.M

“…Highlights • Wild female European eels provide leads for predictive maturation biomarkers. • Expression of steroidogenic genes is increased in…”
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An updated version of the Madagascar periwinkle genome [version 1; peer review: 2 approved] by Cuello, Clément, Stander, Emily Amor, Jansen, Hans J., Dugé De Bernonville, Thomas, Oudin, Audrey, Birer Williams, Caroline, Lanoue, Arnaud, Giglioli Guivarc'h, Nathalie, Papon, Nicolas, Dirks, Ron P., Jensen, Michael Krogh, O'Connor, Sarah Ellen, Besseau, Sébastien, Courdavault, Vincent

“…The Madagascar periwinkle, Catharanthus roseus, belongs to the Apocynaceae family. This medicinal plant, endemic to Madagascar, produces many important drugs…”
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Comparison of the exomes of common carp (Cyprinus carpio) and zebrafish (Danio rerio) by Henkel, Christiaan V, Dirks, Ron P, Jansen, Hans J, Forlenza, Maria, Wiegertjes, Geert F, Howe, Kerstin, van den Thillart, Guido E E J M, Spaink, Herman P

“…Research on common carp, Cyprinus carpio, is beneficial for zebrafish research because of resources available owing to its large body size, such as the…”
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De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencing by Liem, Michael, Jansen, Hans J., Dirks, Ron P., Henkel, Christiaan V., van Heusden, G. Paul H., Lemmers, Richard J.L.F., Omer, Trifa, Shao, Shuai, Punt, Peter J., Spaink, Herman P.

“…Background : The introduction of the MinION sequencing device by Oxford Nanopore Technologies may greatly accelerate whole genome sequencing. Nanopore sequence…”
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Analyzing the function of a hox gene: An evolutionary approach by Michaut, Lydia, Jansen, Hans J., Bardine, Nabila, Durston, Antony J., Gehring, Walter J.

“…We present an evolutionary approach to dissecting conserved developmental mechanisms. We reason that important mechanisms for making the bodyplan will act…”
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king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system by Vonk, Freek J., Casewell, Nicholas R., Henkel, Christiaan V., Heimberg, Alysha M., Jansen, Hans J., McCleary, Ryan J. R., Kerkkamp, Harald M. E., Vos, Rutger A., Guerreiro, Isabel, Calvete, Juan J., Wüster, Wolfgang, Woods, Anthony E., Logan, Jessica M., Harrison, Robert A., Castoe, Todd A., de Koning, A. P. Jason, Pollock, David D., Yandell, Mark, Calderon, Diego, Renjifo, Camila, Currier, Rachel B., Salgado, David, Pla, Davinia, Sanz, Libia, Hyder, Asad S., Ribeiro, José M. C., Arntzen, Jan W., van den Thillart, Guido E. E. J. M., Boetzer, Marten, Pirovano, Walter, Dirks, Ron P., Spaink, Herman P., Duboule, Denis, McGlinn, Edwina, Kini, Manjunatha, Richardson, Michael K.

“…Snakes are limbless predators, and many species use venom to help overpower relatively large, agile prey. Snake venoms are complex protein mixtures encoded by…”
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XMeis3 is necessary for mesodermal Hox gene expression and function by In der Rieden, Paul M J, Jansen, Hans J, Durston, Antony J

“…Hox transcription factors provide positional information during patterning of the anteroposterior axis. Hox transcription factors can co-operatively bind with…”
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Rapid de novo assembly of the European eel genome from nanopore sequencing reads by Jansen, Hans J., Liem, Michael, Jong-Raadsen, Susanne A., Dufour, Sylvie, Weltzien, Finn-Arne, Swinkels, William, Koelewijn, Alex, Palstra, Arjan P., Pelster, Bernd, Spaink, Herman P., Thillart, Guido E. van den, Dirks, Ron P., Henkel, Christiaan V.

“…We have sequenced the genome of the endangered European eel using the MinION by Oxford Nanopore, and assembled these data using a novel algorithm specifically…”
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