Search Results - "Jan G Bjaalie"

Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool by Puchades, Maja A, Csucs, Gergely, Ledergerber, Debora, Leergaard, Trygve B, Bjaalie, Jan G

“…Modern high throughput brain wide profiling techniques for cells and their morphology, connectivity, and other properties, make the use of reference atlases…”
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Waxholm Space atlas of the Sprague Dawley rat brain by Papp, Eszter A., Leergaard, Trygve B., Calabrese, Evan, Johnson, G. Allan, Bjaalie, Jan G.

“…Three-dimensional digital brain atlases represent an important new generation of neuroinformatics tools for understanding complex brain anatomy, assigning…”
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The Human Brain Project-Synergy between neuroscience, computing, informatics, and brain-inspired technologies by Amunts, Katrin, Knoll, Alois C, Lippert, Thomas, Pennartz, Cyriel M A, Ryvlin, Philippe, Destexhe, Alain, Jirsa, Viktor K, D'Angelo, Egidio, Bjaalie, Jan G

“…The Human Brain Project (HBP) is a European flagship project with a 10-year horizon aiming to understand the human brain and to translate neuroscience…”
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The topography of corticopontine projections is controlled by postmitotic expression of the area-mapping gene Nr2f1 by Tocco, Chiara, Øvsthus, Martin, Bjaalie, Jan G, Leergaard, Trygve B, Studer, Michèle

“…Axonal projections from layer V neurons of distinct neocortical areas are topographically organized into discrete clusters within the pontine nuclei during the…”
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Waxholm Space atlas of the rat brain hippocampal region: Three-dimensional delineations based on magnetic resonance and diffusion tensor imaging by Kjonigsen, Lisa J., Lillehaug, Sveinung, Bjaalie, Jan G., Witter, Menno P., Leergaard, Trygve B.

“…Atlases of the rat brain are widely used as reference for orientation, planning of experiments, and as tools for assigning location to experimental data…”
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DeepSlice: rapid fully automatic registration of mouse brain imaging to a volumetric atlas by Carey, Harry, Pegios, Michael, Martin, Lewis, Saleeba, Chris, Turner, Anita J., Everett, Nicholas A., Bjerke, Ingvild E., Puchades, Maja A., Bjaalie, Jan G., McMullan, Simon

“…Registration of data to a common frame of reference is an essential step in the analysis and integration of diverse neuroscientific data. To this end,…”
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Quantitative histological validation of diffusion MRI fiber orientation distributions in the rat brain by Leergaard, Trygve B, White, Nathan S, de Crespigny, Alex, Bolstad, Ingeborg, D'Arceuil, Helen, Bjaalie, Jan G, Dale, Anders M

“…Diffusion MRI (dMRI) is widely used to measure microstructural features of brain white matter, but commonly used dMRI measures have limited capacity to resolve…”
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Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images by Groeneboom, Nicolaas E., Yates, Sharon C., Puchades, Maja A., Bjaalie, Jan G.

“…With recent technological advances in microscopy and image acquisition of tissue sections, further developments of tools are required for viewing, transforming…”
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The International Brain Initiative: enabling collaborative science by Quaglio, Gianluca, Toia, Patrizia, Moser, Edvard I, Karapiperis, Theodoros, Amunts, Katrin, Okabe, Shigeo, Poo, Mu-ming, Rah, Jong-Cheol, Koninck, Yves De, Ngai, John, Richards, Linda, Bjaalie, Jan G

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A three-plane architectonic atlas of the rat hippocampal region by Boccara, Charlotte N., Kjonigsen, Lisa J., Hammer, Ingvild M., Bjaalie, Jan G., Leergaard, Trygve B., Witter, Menno P.

“…ABSTRACT The hippocampal region, comprising the hippocampal formation and the parahippocampal region, has been one of the most intensively studied parts of the…”
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QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain by Yates, Sharon C, Groeneboom, Nicolaas E, Coello, Christopher, Lichtenthaler, Stefan F, Kuhn, Peer-Hendrik, Demuth, Hans-Ulrich, Hartlage-Rübsamen, Maike, Roßner, Steffen, Leergaard, Trygve, Kreshuk, Anna, Puchades, Maja A, Bjaalie, Jan G

“…Transgenic animal models are invaluable research tools for elucidating the pathways and mechanisms involved in the development of neurodegenerative diseases…”
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Anatomical landmarks for registration of experimental image data to volumetric rodent brain atlasing templates by Sergejeva, Marina, Papp, Eszter A., Bakker, Rembrandt, Gaudnek, Manuel A., Okamura-Oho, Yuko, Boline, Jyl, Bjaalie, Jan G., Hess, Andreas

“…•16 anatomical landmarks reliably recognized in T1, T2, and T2* mouse brain MRI.•All landmarks identified in Nissl histology and block-face images from the…”
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3D Atlas of the Pituitary Gland of the Model Fish Medaka ( Oryzias latipes ) by Royan, Muhammad Rahmad, Siddique, Khadeeja, Csucs, Gergely, Puchades, Maja A, Nourizadeh-Lillabadi, Rasoul, Bjaalie, Jan G, Henkel, Christiaan V, Weltzien, Finn-Arne, Fontaine, Romain

“…In vertebrates, the anterior pituitary plays a crucial role in regulating several essential physiological processes the secretion of at least seven peptide…”
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The efferent connections of the orbitofrontal, posterior parietal, and insular cortex of the rat brain by Reiten, Ingrid, Olsen, Grethe M., Bjaalie, Jan G., Witter, Menno P., Leergaard, Trygve B.

“…The orbitofrontal, posterior parietal, and insular cortices are sites of higher-order cognitive processing implicated in a wide range of behaviours, including…”
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Spatially integrated cortico-subcortical tracing data for analyses of rodent brain topographical organization by Øvsthus, Martin, van Swieten, Maaike M. H., Puchades, Maja A., Tocco, Chiara, Studer, Michèle, Bjaalie, Jan G., Leergaard, Trygve B.

“…The cerebral cortex extends axonal projections to several subcortical brain regions, including the striatum, thalamus, superior colliculus, and pontine nuclei…”
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Densities and numbers of calbindin and parvalbumin positive neurons across the rat and mouse brain by Bjerke, Ingvild E., Yates, Sharon C., Laja, Arthur, Witter, Menno P., Puchades, Maja A., Bjaalie, Jan G., Leergaard, Trygve B.

“…The calcium-binding proteins parvalbumin and calbindin are expressed in neuronal populations regulating brain networks involved in spatial navigation, memory…”
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Editorial: APPNING: Animal Population Imaging by Dojat, Michel, Bjaalie, Jan G., Barbier, Emmanuel L.

“…Mandino et al. review the efforts done by the animal MRI community toward the standardization of data acquisition and analysis procedures in the context of…”
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The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases by Blixhavn, Camilla H, Reiten, Ingrid, Kleven, Heidi, Øvsthus, Martin, Yates, Sharon C, Schlegel, Ulrike, Puchades, Maja A, Schmid, Oliver, Bjaalie, Jan G, Bjerke, Ingvild E, Leergaard, Trygve B

“…Neuroscientists employ a range of methods and generate increasing amounts of data describing brain structure and function. The anatomical locations from which…”
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AtOM, an ontology model to standardize use of brain atlases in tools, workflows, and data infrastructures by Kleven, Heidi, Gillespie, Thomas H., Zehl, Lyuba, Dickscheid, Timo, Bjaalie, Jan G., Martone, Maryann E., Leergaard, Trygve B.

“…Brain atlases are important reference resources for accurate anatomical description of neuroscience data. Open access, three-dimensional atlases serve as…”
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A neuroscientist's guide to using murine brain atlases for efficient analysis and transparent reporting by Kleven, Heidi, Reiten, Ingrid, Blixhavn, Camilla H, Schlegel, Ulrike, Øvsthus, Martin, Papp, Eszter A, Puchades, Maja A, Bjaalie, Jan G, Leergaard, Trygve B, Bjerke, Ingvild E

“…Brain atlases are widely used in neuroscience as resources for conducting experimental studies, and for integrating, analyzing, and reporting data from animal…”
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