Search Results - "Jamal Rahi, Sahand"

A convolutional neural network segments yeast microscopy images with high accuracy by Dietler, Nicola, Minder, Matthias, Gligorovski, Vojislav, Economou, Augoustina Maria, Joly, Denis Alain Henri Lucien, Sadeghi, Ahmad, Chan, Chun Hei Michael, Koziński, Mateusz, Weigert, Martin, Bitbol, Anne-Florence, Rahi, Sahand Jamal

“…The identification of cell borders (‘segmentation’) in microscopy images constitutes a bottleneck for large-scale experiments. For the model organism…”
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Using Machine Learning to Predict Mortality for COVID-19 Patients on Day 0 in the ICU by Jamshidi, Elham, Asgary, Amirhossein, Tavakoli, Nader, Zali, Alireza, Setareh, Soroush, Esmaily, Hadi, Jamaldini, Seyed Hamid, Daaee, Amir, Babajani, Amirhesam, Sendani Kashi, Mohammad Ali, Jamshidi, Masoud, Jamal Rahi, Sahand, Mansouri, Nahal

“…Given the expanding number of COVID-19 cases and the potential for new waves of infection, there is an urgent need for early prediction of the severity of the…”
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Multidimensional characterization of inducible promoters and a highly light-sensitive LOV-transcription factor by Gligorovski, Vojislav, Sadeghi, Ahmad, Rahi, Sahand Jamal

“…The ability to independently control the expression of different genes is important for quantitative biology. Using budding yeast, we characterize GAL1pr ,…”
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CenFind: a deep-learning pipeline for efficient centriole detection in microscopy datasets by Bürgy, Léo, Weigert, Martin, Hatzopoulos, Georgios, Minder, Matthias, Journé, Adrien, Rahi, Sahand Jamal, Gönczy, Pierre

“…High-throughput and selective detection of organelles in immunofluorescence images is an important but demanding task in cell biology. The centriole organelle…”
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The CDK-APC/C Oscillator Predominantly Entrains Periodic Cell-Cycle Transcription by Rahi, Sahand Jamal, Pecani, Kresti, Ondracka, Andrej, Oikonomou, Catherine, Cross, Frederick R.

“…Throughout cell-cycle progression, the expression of multiple transcripts oscillate, and whether these are under the centralized control of the CDK-APC/C…”
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Longevity of immunity following COVID-19 vaccination: a comprehensive review of the currently approved vaccines by Jamshidi, Elham, Asgary, Amirhossein, Shafiekhani, Paria, Khajeamiri, Yasaman, Mohamed, Kawthar, Esmaily, Hadi, Jamal Rahi, Sahand, Mansouri, Nahal

“…It is unknown how long the immunity following COVID-19 vaccination lasts. The current systematic review provides a perspective on the persistence of various…”
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Analytical results on Casimir forces for conductors with edges and tips by Maghrebi, Mohammad F, Rahi, Sahand Jamal, Emig, Thorsten, Graham, Noah, Jaffe, Robert L, Kardar, Mehran

“…Casimir forces between conductors at the submicron scale are paramount to the design and operation of microelectromechanical devices. However, these forces…”
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Personalized predictions of adverse side effects of the COVID-19 vaccines by Jamshidi, Elham, Asgary, Amirhossein, Kharrazi, Ali Yazdizadeh, Tavakoli, Nader, Zali, Alireza, Mehrazi, Maryam, Jamshidi, Masoud, Farrokhi, Babak, Maher, Ali, von Garnier, Christophe, Rahi, Sahand Jamal, Mansouri, Nahal

“…Misconceptions about adverse side effects are thought to influence public acceptance of the Coronavirus disease 2019 (COVID-19) vaccines negatively. To address…”
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Symptom Prediction and Mortality Risk Calculation for COVID-19 Using Machine Learning by Jamshidi, Elham, Asgary, Amirhossein, Tavakoli, Nader, Zali, Alireza, Dastan, Farzaneh, Daaee, Amir, Badakhshan, Mohammadtaghi, Esmaily, Hadi, Jamaldini, Seyed Hamid, Safari, Saeid, Bastanhagh, Ehsan, Maher, Ali, Babajani, Amirhesam, Mehrazi, Maryam, Sendani Kashi, Mohammad Ali, Jamshidi, Masoud, Sendani, Mohammad Hassan, Rahi, Sahand Jamal, Mansouri, Nahal

“…Early prediction of symptoms and mortality risks for COVID-19 patients would improve healthcare outcomes, allow for the appropriate distribution of healthcare…”
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Inferring how animals deform improves cell tracking

“…Tracking cells is a time-consuming part of biological image analysis, and traditional manual annotation methods are prohibitively laborious for tracking…”
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Predicting transcription factor specificity with all-atom models by Jamal Rahi, Sahand, Virnau, Peter, Mirny, Leonid A, Kardar, Mehran

“…The binding of a transcription factor (TF) to a DNA operator site can initiate or repress the expression of a gene. Computational prediction of sites…”
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Scattering theory approach to electrodynamic Casimir forces by Rahi, Sahand Jamal, Emig, Thorsten, Graham, Noah, Jaffe, Robert L., Kardar, Mehran

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Construction and Characterization of Light-Responsive Transcriptional Systems by Gligorovski, Vojislav, Rahi, Sahand Jamal

“…Optogenetic tools provide a means for controlling cellular processes that is rapid, noninvasive, and spatially and temporally precise. With the increase in…”
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The optimal strategy balancing risk and speed predicts DNA damage checkpoint override times by Sadeghi, Ahmad, Dervey, Roxane, Gligorovski, Vojislav, Labagnara, Marco, Rahi, Sahand Jamal

“…Checkpoints arrest biological processes, allowing time for error correction. The phenomenon of checkpoint override during cellular self-replication is…”
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Stable levitation and alignment of compact objects by Casimir spring forces by Rahi, Sahand Jamal, Zaheer, Saad

“…We investigate a stable Casimir force configuration consisting of an object contained inside a spherical or spheroidal cavity filled with a dielectric medium…”
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Subharmonics and Chaos in Simple Periodically Forced Biomolecular Models by Nikolaev, Evgeni V., Rahi, Sahand Jamal, Sontag, Eduardo D.

“…This article uncovers a remarkable behavior in two biochemical systems that commonly appear as components of signal transduction pathways in systems biology…”
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Automated neuron tracking inside moving and deforming C. elegans using deep learning and targeted augmentation by Park, Core Francisco, Barzegar-Keshteli, Mahsa, Korchagina, Kseniia, Delrocq, Ariane, Susoy, Vladislav, Jones, Corinne L., Samuel, Aravinthan D. T., Rahi, Sahand Jamal

“…Reading out neuronal activity from three-dimensional (3D) functional imaging requires segmenting and tracking individual neurons. This is challenging in…”
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Oscillatory stimuli differentiate adapting circuit topologies by Rahi, Sahand Jamal, Larsch, Johannes, Pecani, Kresti, Katsov, Alexander Y, Mansouri, Nahal, Tsaneva-Atanasova, Krasimira, Sontag, Eduardo D, Cross, Frederick R

“…Negative feedback and incoherent feed-forward loops are the only circuit motifs that can adapt in response to stimuli. Rahi et al . describe signatures that…”
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The multimodality cell segmentation challenge: toward universal solutions by Ma, Jun, Xie, Ronald, Ayyadhury, Shamini, Ge, Cheng, Gupta, Anubha, Gupta, Ritu, Gu, Song, Zhang, Yao, Lee, Gihun, Kim, Joonkee, Lou, Wei, Li, Haofeng, Upschulte, Eric, Dickscheid, Timo, de Almeida, José Guilherme, Wang, Yixin, Han, Lin, Yang, Xin, Labagnara, Marco, Gligorovski, Vojislav, Scheder, Maxime, Rahi, Sahand Jamal, Kempster, Carly, Pollitt, Alice, Espinosa, Leon, Mignot, Tâm, Middeke, Jan Moritz, Eckardt, Jan-Niklas, Li, Wangkai, Li, Zhaoyang, Cai, Xiaochen, Bai, Bizhe, Greenwald, Noah F., Van Valen, David, Weisbart, Erin, Cimini, Beth A., Cheung, Trevor, Brück, Oscar, Bader, Gary D., Wang, Bo

“…Cell segmentation is a critical step for quantitative single-cell analysis in microscopy images. Existing cell segmentation methods are often tailored to…”
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Constraints on stable equilibria with fluctuation-induced (Casimir) forces by Rahi, Sahand Jamal, Kardar, Mehran, Emig, Thorsten

“…We examine whether fluctuation-induced forces can lead to stable levitation. First, we analyze a collection of classical objects at finite temperature that…”
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