Search Results - "Jakovlić, Ivan"

PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies by Zhang, Dong, Gao, Fangluan, Jakovlić, Ivan, Zou, Hong, Zhang, Jin, Li, Wen X., Wang, Gui T.

“…Multigene and genomic data sets have become commonplace in the field of phylogenetics, but many existing tools are not designed for such data sets, which often…”
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Using PhyloSuite for molecular phylogeny and tree‐based analyses by Xiang, Chuan‐Yu, Gao, Fangluan, Jakovlić, Ivan, Lei, Hong‐Peng, Hu, Ye, Zhang, Hong, Zou, Hong, Wang, Gui‐Tang, Zhang, Dong

“…Phylogenetic analysis has entered the genomics (multilocus) era. For less experienced researchers, conquering the large number of software programs required…”
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Sequencing of the complete mitochondrial genomes of eight freshwater snail species exposes pervasive paraphyly within the Viviparidae family (Caenogastropoda) by Wang, Ju-Guang, Zhang, Dong, Jakovlić, Ivan, Wang, Wei-Min

“…Phylogenetic relationships among snails (Caenogastropoda) are still unresolved, and many taxonomic categories remain non-monophyletic. Paraphyly has been…”
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Transcriptomics, metabolomics and histology indicate that high-carbohydrate diet negatively affects the liver health of blunt snout bream (Megalobrama amblycephala) by Prisingkorn, Wassana, Prathomya, Panita, Jakovlić, Ivan, Liu, Han, Zhao, Yu-Hua, Wang, Wei-Min

“…Global trend of the introduction of high levels of relatively cheap carbohydrates to reduce the amount of costly protein in the aquatic animal feed production…”
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Mitogenomic evolutionary rates in bilateria are influenced by parasitic lifestyle and locomotory capacity by Jakovlić, Ivan, Zou, Hong, Ye, Tong, Zhang, Hong, Liu, Xiang, Xiang, Chuan-Yu, Wang, Gui-Tang, Zhang, Dong

“…The evidence that parasitic animals exhibit elevated mitogenomic evolutionary rates is inconsistent and limited to Arthropoda. Similarly, the evidence that…”
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Adhesion and colonization properties of potentially probiotic Bacillus paralicheniformis strain FA6 isolated from grass carp intestine by Zhao, Di, Wu, Shangong, Feng, Wenwen, Jakovlić, Ivan, Tran, Ngoc Tuan, Xiong, Fan

“…As a prerequisite for probiotics to establish and settle in the host intestine, adhesion is an essential criterion for probiotic screening. However, adhesion…”
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Succession and Fermentation Products of Grass Carp ( Ctenopharyngodon idellus ) Hindgut Microbiota in Response to an Extreme Dietary Shift by Hao, Yao Tong, Wu, Shan Gong, Xiong, Fan, Tran, Ngoc T, Jakovlić, Ivan, Zou, Hong, Li, Wen Xiang, Wang, Gui Tang

“…Dietary intake affects the structure and function of microbes in host intestine. However, the succession of gut microbiota in response to changes in…”
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A chromosome-level genome assembly of Cairina moschata and comparative genomic analyses by Jiang, Fan, Jiang, Yaoxin, Wang, Wenxuan, Xiao, Changyi, Lin, Ruiyi, Xie, Tanghui, Sung, Wing-Kin, Li, Shijun, JakovliÄ, Ivan, Chen, Jianhai, Du, Xiaoyong

“…Abstract Background The Muscovy duck ( Cairina moschata ) is an economically important duck species, with favourable growth and carcass composition parameters…”
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Positive selection-driven fixation of a hominin-specific amino acid mutation related to dephosphorylation in IRF9 by Chen, Jianhai, He, Xuefei, JakovliÄ, Ivan

“…Abstract The arms race between humans and pathogens drives the evolution of the human genome. It is thus expected that genes from the interferon-regulatory…”
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Three new Diplozoidae mitogenomes expose unusual compositional biases within the Monogenea class: implications for phylogenetic studies by Zhang, Dong, Zou, Hong, Wu, Shan G, Li, Ming, Jakovlić, Ivan, Zhang, Jin, Chen, Rong, Li, Wen X, Wang, Gui T

“…As the topologies produced by previous molecular and morphological studies were contradictory and unstable (polytomy), evolutionary relationships within the…”
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The Role of Intestinal Microbiota in Regulating the Metabolism of Bile Acids Is Conserved Across Vertebrates by Xiong, Fan, Chen, Sijia, Jakovlić, Ivan, Li, Wenxiang, Li, Ming, Zou, Hong, Wang, Guitang, Wu, Shangong

“…In mammals, bile acid (BA) concentrations are regulated largely by the gut microbiota, and a study has shown that some metabolic responses to the gut…”
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Inverted base composition skews and discontinuous mitochondrial genome architecture evolution in the Enoplea (Nematoda) by Zou, Hong, Chen, Fang-Lin, Li, Wen-Xiang, Li, Ming, Lei, Hong-Peng, Zhang, Dong, Jakovlić, Ivan, Wang, Gui-Tang

“…Within the class Enoplea, the earliest-branching lineages in the phylum Nematoda, the relatively highly conserved ancestral mitochondrial architecture of…”
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The mitochondrial genome of Heterosentis pseudobagri (Wang & Zhang, 1987) Pichelin & Cribb, 1999 reveals novel aspects of tRNA genes evolution in Acanthocephala by Gao, Jin-Wei, Yuan, Xi-Ping, Jakovlić, Ivan, Wu, Hao, Xiang, Chuan-Yu, Xie, Min, Song, Rui, Xie, Zhong-Gui, Wu, Yuan-An, Ou, Dong-Sheng

“…Acanthocephala is a clade of obligate endoparasites whose mitochondrial genomes (mitogenomes) and evolution remain relatively poorly understood. Previous…”
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Mitochondrial genomes of two diplectanids (Platyhelminthes: Monogenea) expose paraphyly of the order Dactylogyridea and extensive tRNA gene rearrangements by Zhang, Dong, Li, Wen X, Zou, Hong, Wu, Shan G, Li, Ming, Jakovlić, Ivan, Zhang, Jin, Chen, Rong, Wang, Gui T

“…Recent mitochondrial phylogenomics studies have reported a sister-group relationship of the orders Capsalidea and Dactylogyridea, which is inconsistent with…”
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Population size may shape the accumulation of functional mutations following domestication by Chen, Jianhai, Ni, Pan, Li, Xinyun, Han, Jianlin, Jakovlić, Ivan, Zhang, Chengjun, Zhao, Shuhong

“…Population genetics theory predicts an important role of differences in the effective population size (N ) among species on shaping the accumulation of…”
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Dietary Bile Salt Types Influence the Composition of Biliary Bile Acids and Gut Microbiota in Grass Carp by Xiong, Fan, Wu, Shan-Gong, Zhang, Jing, Jakovlić, Ivan, Li, Wen-Xiang, Zou, Hong, Li, Ming, Wang, Gui-Tang

“…Lipid metabolism can influence host's health. There is increasing evidence for interplay between two key regulating factors in lipid metabolism: bile acids…”
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The complete mitochondrial genome of Cymothoa indica has a highly rearranged gene order and clusters at the very base of the Isopoda clade by Zou, Hong, Jakovlić, Ivan, Zhang, Dong, Chen, Rong, Mahboob, Shahid, Al-Ghanim, Khalid Abdullah, Al-Misned, Fahad, Li, Wen-Xiang, Wang, Gui-Tang

“…As a result of great diversity in life histories and a large number of described species, taxonomic and phylogenetic uncertainty permeates the entire…”
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Geography, phylogeny and host switch drive the coevolution of parasitic Gyrodactylus flatworms and their hosts by Lei, Hong-Peng, Jakovlić, Ivan, Zhou, Shun, Liu, Xiang, Yan, Chuan, Jin, Xiao, Wang, Bo, Li, Wen-Xiang, Wang, Gui-Tang, Zhang, Dong

“…Gyrodactylus is a lineage of monogenean flatworm ectoparasites exhibiting many features that make them a suitable model to study the host-parasite…”
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The complete mitochondrial genome of parasitic nematode Camallanus cotti: extreme discontinuity in the rate of mitogenomic architecture evolution within the Chromadorea class by Zou, Hong, Jakovlić, Ivan, Chen, Rong, Zhang, Dong, Zhang, Jin, Li, Wen-Xiang, Wang, Gui-Tang

“…Complete mitochondrial genomes are much better suited for the taxonomic identification and phylogenetic studies of nematodes than morphology or…”
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Morphology is not a reliable taxonomic tool for the genus Lernaea: molecular data and experimental infection reveal that L. cyprinacea and L. cruciata are conspecific by Hua, Cong J, Zhang, Dong, Zou, Hong, Li, Ming, Jakovlić, Ivan, Wu, Shan G, Wang, Gui T, Li, Wen X

“…Species belonging to the genus Lernaea are cosmopolitan parasites that can infect many different freshwater fish hosts. Due to a high degree of morphological…”
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