Search Results - "Jain, Aashish"

Phylo-PFP: improved automated protein function prediction using phylogenetic distance of distantly related sequences by Jain, Aashish, Kihara, Daisuke

“…Abstract Motivation Function annotation of proteins is fundamental in contemporary biology across fields including genomics, molecular biology, biochemistry,…”
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Analyzing effect of quadruple multiple sequence alignments on deep learning based protein inter-residue distance prediction by Jain, Aashish, Terashi, Genki, Kagaya, Yuki, Maddhuri Venkata Subramaniya, Sai Raghavendra, Christoffer, Charles, Kihara, Daisuke

“…Protein 3D structure prediction has advanced significantly in recent years due to improving contact prediction accuracy. This improvement has been largely due…”
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The Balancing Act of Intrinsically Disordered Proteins: Enabling Functional Diversity while Minimizing Promiscuity by Macossay-Castillo, Mauricio, Marvelli, Giulio, Guharoy, Mainak, Jain, Aashish, Kihara, Daisuke, Tompa, Peter, Wodak, Shoshana J.

“…Intrinsically disordered proteins (IDPs) or regions (IDRs) perform diverse cellular functions, but are also prone to forming promiscuous and potentially…”
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Simulations of knotting of DNA during genome mapping by Jain, Aashish, Dorfman, Kevin D.

“…Genome mapping involves the confinement of long DNA molecules, in excess of 150 kilobase pairs, in nanochannels near the circa 50 nm persistence length of DNA…”
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A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes by Toh, Huishi, Yang, Chentao, Formenti, Giulio, Raja, Kalpana, Yan, Lily, Tracey, Alan, Chow, William, Howe, Kerstin, Bergeron, Lucie A, Zhang, Guojie, Haase, Bettina, Mountcastle, Jacquelyn, Fedrigo, Olivier, Fogg, John, Kirilenko, Bogdan, Munegowda, Chetan, Hiller, Michael, Jain, Aashish, Kihara, Daisuke, Rhie, Arang, Phillippy, Adam M, Swanson, Scott A, Jiang, Peng, Clegg, Dennis O, Jarvis, Erich D, Thomson, James A, Stewart, Ron, Chaisson, Mark J. P, Bukhman, Yury V

“…Abstract Background The Nile rat ( Avicanthis niloticus ) is an important animal model because of its robust diurnal rhythm, a cone-rich retina, and a…”
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ContactPFP: Protein Function Prediction Using Predicted Contact Information by Kagaya, Yuki, Flannery, Sean T., Jain, Aashish, Kihara, Daisuke

“…Computational function prediction is one of the most important problems in bioinformatics as elucidating the function of genes is a central task in molecular…”
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Brownian dynamics simulations of planar mixed flows of polymer solutions at finite concentrations by Jain, Aashish, Sasmal, Chandi, Hartkamp, Remco, Todd, B.D., Prakash, J. Ravi

“…Periodic boundary conditions for planar mixed flows are implemented in the context of a multi-chain Brownian dynamics simulation algorithm. The effect of shear…”
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Evaluation of the Kirkwood approximation for the diffusivity of channel-confined DNA chains in the de Gennes regime by Jain, Aashish, Dorfman, Kevin D

“…We use Brownian dynamics with hydrodynamic interactions to calculate both the Kirkwood (short-time) diffusivity and the long-time diffusivity of DNA chains…”
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Cardiac surgery in a patient with implanted vagal nerve stimulator by Jain, Aashish, Arora, Dheeraj, Mehta, Yatin

“…The prevalence of epilepsy worldwide is around 0.5%-2% of the population. Antiepileptic medications are the first line of treatment in most of the cases but…”
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Designing regression approach for mode frequency prediction of empty and filled steel silos by Jain, Aashish Kumar, Bhargava, Rajesh, Rawat, Aruna

“…In this study the primary objective is to design prediction model for the free vibration analysis of thin circular cylindrical steel silos having various…”
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Clinical Use of a Real-World Low Carbohydrate Diet Resulting in Reduction of Insulin Dose, Hemoglobin A1c, and Weight by Wolver, Susan, Fadel, Kristen, Fieger, Ethan, Aburish, Zein, O'Rourke, Brennen, Chandler, Toni-Marie, Shimotani, Dorian, Clingempeel, Natasha, Jain, Shuchi, Jain, Aashish, Puri, Puneet

“…Type 2 Diabetes Mellitus (T2DM) is increasing in epidemic proportions. In addition to the morbidity and mortality, for those treated with insulin, the…”
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NNTox: Gene Ontology-Based Protein Toxicity Prediction Using Neural Network by Jain, Aashish, Kihara, Daisuke

“…With advancements in synthetic biology, the cost and the time needed for designing and synthesizing customized gene products have been steadily decreasing…”
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Headache and seizures after cervical epidural injection in a patient undergoing coronary artery bypass grafting by Arora, Dheeraj, Mehta, Yatin, Jain, Aashish, Trehan, Naresh

“…Epidural analgesia is widely used in cardiothoracic surgery. Most of the complications associated with epidural analgesia are related to the insertion…”
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Identification of Moonlighting Proteins in Genomes Using Text Mining Techniques by Jain, Aashish, Gali, Hareesh, Kihara, Daisuke

“…Moonlighting proteins is an emerging concept for considering protein functions, which indicate proteins with two or more independent and distinct functions. An…”
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Protein contact map refinement for improving structure prediction using generative adversarial networks by Maddhuri Venkata Subramaniya, Sai Raghavendra, Terashi, Genki, Jain, Aashish, Kagaya, Yuki, Kihara, Daisuke

“…Abstract Motivation Protein structure prediction remains as one of the most important problems in computational biology and biophysics. In the past few years,…”
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589 CLINICAL CARE PATHWAYS HELP AVOID UNNECESSARY SPECIALTY CARE REFERRALS FOR NON-ALCOHOLIC FATTY LIVER DISEASE (NAFLD): IMPLICATIONS FOR RESOURCE UTILIZATION IN PRIMARY AND SPECIALTY CARE by Puri, Puneet, Spataro, Joseph, Morris, April, Lemmons, Joelle, Jain, Aashish, Gilles, Hochong, Jain, Shuchi, Fuchs, Michael

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Prediction of protein group function by iterative classification on functional relevance network by Khan, Ishita K, Jain, Aashish, Rawi, Reda, Bensmail, Halima, Kihara, Daisuke

“…Abstract Motivation Biological experiments including proteomics and transcriptomics approaches often reveal sets of proteins that are most likely to be…”
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Machine Learning Approaches Towards Protein Structure and Function Prediction by Jain, Aashish

“…Proteins are drivers of almost all biological processes in the cell. The functions of a protein are dependent on their three-dimensional structure and…”
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Low-cost non-intrusive device identification system by Srinivasan, Gosakan, Anandan, Chandirasekarendiran, Jain, S Aashish Kumar, Ahmed, Syed Shahbaaz, Vijayaraghavan, Vineeth

“…This paper explains the design and implementation of a low cost Non-Intrusive Load Monitoring (NILM) system. The system is designed using open source hardware…”
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Transcaval aortic valve implantation in a patient with Larsen syndrome: technical and anesthetic challenges by Singh, Ajmer, Jain, Aashish, Mehta, Yatin, Chandra, Praveen

“…Transcatheter aortic valve implantation has emerged as a therapeutic option for patients with symptomatic severe aortic stenosis who are inoperable, or at very…”
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