Search Results - "Iyer, Preeti"

Simultaneous inhibition of DNA-PK and Polϴ improves integration efficiency and precision of genome editing by Wimberger, Sandra, Akrap, Nina, Firth, Mike, Brengdahl, Johan, Engberg, Susanna, Schwinn, Marie K., Slater, Michael R., Lundin, Anders, Hsieh, Pei-Pei, Li, Songyuan, Cerboni, Silvia, Sumner, Jonathan, Bestas, Burcu, Schiffthaler, Bastian, Magnusson, Björn, Di Castro, Silvio, Iyer, Preeti, Bohlooly-Y, Mohammad, Machleidt, Thomas, Rees, Steve, Engkvist, Ola, Norris, Tyrell, Cadogan, Elaine B., Forment, Josep V., Šviković, Saša, Akcakaya, Pinar, Taheri-Ghahfarokhi, Amir, Maresca, Marcello

“…Genome editing, specifically CRISPR/Cas9 technology, has revolutionized biomedical research and offers potential cures for genetic diseases. Despite rapid…”
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Rationalizing Three-Dimensional Activity Landscapes and the Influence of Molecular Representations on Landscape Topology and the Formation of Activity Cliffs by Peltason, Lisa, Iyer, Preeti, Bajorath, Jürgen

“…Activity landscapes are defined by potency and similarity distributions of active compounds and reflect the nature of structure−activity relationships (SARs)…”
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MAIP: a web service for predicting blood‐stage malaria inhibitors by Bosc, Nicolas, Felix, Eloy, Arcila, Ricardo, Mendez, David, Saunders, Martin R., Green, Darren V. S., Ochoada, Jason, Shelat, Anang A., Martin, Eric J., Iyer, Preeti, Engkvist, Ola, Verras, Andreas, Duffy, James, Burrows, Jeremy, Gardner, J. Mark F., Leach, Andrew R.

“…Malaria is a disease affecting hundreds of millions of people across the world, mainly in developing countries and especially in sub-Saharan Africa. It is the…”
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Nuclear fascin regulates cancer cell survival by Lawson, Campbell D, Peel, Samantha, Jayo, Asier, Corrigan, Adam, Iyer, Preeti, Baxter Dalrymple, Mabel, Marsh, Richard J, Cox, Susan, Van Audenhove, Isabel, Gettemans, Jan, Parsons, Maddy

“…Fascin is an important regulator of F-actin bundling leading to enhanced filopodia assembly. Fascin is also overexpressed in most solid tumours where it…”
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Pluripotent Stem Cell-Derived Hepatocytes Phenotypic Screening Reveals Small Molecules Targeting the CDK2/4-C/EBPα/DGAT2 Pathway Preventing ER-Stress Induced Lipid Accumulation by Parafati, Maddalena, Bae, Sang Hyo, Kirby, R Jason, Fitzek, Martina, Iyer, Preeti, Engkvist, Ola, Smith, David M, Malany, Siobhan

“…Non-alcoholic fatty liver disease (NAFLD) has a large impact on global health. At the onset of disease, NAFLD is characterized by hepatic steatosis defined by…”
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Predicting Potent Compounds via Model-Based Global Optimization by Ahmadi, Mohsen, Vogt, Martin, Iyer, Preeti, Bajorath, Jürgen, Fröhlich, Holger

“…Finding potent compounds for a given target in silico can be viewed as a constraint global optimization problem. This requires the use of an optimization…”
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Are State Telehealth Policies Associated With The Use Of Telehealth Services Among Underserved Populations? by Park, Jeongyoung, Erikson, Clese, Han, Xinxin, Iyer, Preeti

“…Using four years of data from a nationally representative consumer survey, we examined trends in telehealth usage over time and the role state telehealth…”
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Prediction of Individual Compounds Forming Activity Cliffs Using Emerging Chemical Patterns by Namasivayam, Vigneshwaran, Iyer, Preeti, Bajorath, Jürgen

“…Activity cliffs are formed by structurally similar or analogous compounds having large potency differences. In medicinal chemistry, pairs or groups of…”
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Public-Private Partnerships: Compound and Data Sharing in Drug Discovery and Development by Davis, Andrew M, Engkvist, Ola, Fairclough, Rebecca J, Feierberg, Isabella, Freeman, Adrian, Iyer, Preeti

“…Collaborative efforts between public and private entities such as academic institutions, governments, and pharmaceutical companies form an integral part of…”
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Understanding Intracellular Biology to Improve mRNA Delivery by Lipid Nanoparticles by Hunter, Morag Rose, Cui, Lili, Porebski, Benjamin Thomas, Pereira, Sara, Sonzini, Silvia, Odunze, Uchechukwu, Iyer, Preeti, Engkvist, Ola, Lloyd, Rebecca Louise, Peel, Samantha, Sabirsh, Alan, Ross‐Thriepland, Douglas, Jones, Arwyn Tomos, Desai, Arpan Shailesh

“…Poor understanding of intracellular delivery and targeting hinders development of nucleic acid‐based therapeutics transported by nanoparticles. Utilizing a…”
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Molecular Mechanism-Based Network-like Similarity Graphs Reveal Relationships between Different Types of Receptor Ligands and Structural Changes that Determine Agonistic, Inverse-Agonistic, and Antagonistic Effects by Iyer, Preeti, Stumpfe, Dagmar, Bajorath, Jürgen

“…Receptor ligands might act as agonists, partial agonists, inverse agonists, or antagonists and it is often difficult to understand structural modifications…”
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Representation of Multi-Target Activity Landscapes Through Target Pair-Based Compound Encoding in Self-Organizing Maps by Iyer, Preeti, Bajorath, Jürgen

“…Activity landscape representations provide access to structure‐activity relationships information in compound data sets. In general, activity landscape models…”
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Conditional Probabilities of Activity Landscape Features for Individual Compounds by Vogt, Martin, Iyer, Preeti, Maggiora, Gerald M, Bajorath, Jürgen

“…Activity landscape representations aid in the analysis of structure–activity relationships (SARs) of large compound data sets. Landscapes are characterized by…”
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SAR Monitoring of Evolving Compound Data Sets Using Activity Landscapes by Iyer, Preeti, Hu, Ye, Bajorath, Jürgen

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Navigating High-Dimensional Activity Landscapes: Design and Application of the Ligand-Target Differentiation Map by Iyer, Preeti, Dimova, Dilyana, Vogt, Martin, Bajorath, Jürgen

“…The transformation of high-dimensional bioactivity spaces into activity landscape representations is as of yet an unsolved problem in computational medicinal…”
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Large-Scale Assessment of Activity Landscape Feature Probabilities of Bioactive Compounds by Kayastha, Shilva, Dimova, Dilyana, Iyer, Preeti, Vogt, Martin, Bajorath, Jürgen

“…Activity landscape representations integrate pairwise compound similarity and potency relationships and provide direct access to characteristic…”
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Activity Landscapes, Information Theory, and Structure - Activity Relationships by Iyer, Preeti, Stumpfe, Dagmar, Vogt, Martin, Bajorath, J., Maggiora, G. M.

“…Activity landscapes provide a comprehensive description of structure‐activity relationships (SARs). An information theoretic assessment of their features,…”
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Assessing the Target Differentiation Potential of Imidazole-Based Protein Kinase Inhibitors by Dimova, Dilyana, Iyer, Preeti, Vogt, Martin, Totzke, Frank, Kubbutat, Michael H. G, Schächtele, Christoph, Laufer, Stefan, Bajorath, Jürgen

“…A library of 484 imidazole-based candidate inhibitors was tested against 24 protein kinases. The resulting activity data have been systematically analyzed to…”
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Extraction of Discontinuous Structure–Activity Relationships from Compound Data Sets through Particle Swarm Optimization by Namasivayam, Vigneshwaran, Iyer, Preeti, Bajorath, Jürgen

“…The characterization of structure–activity relationship (SAR) features of large compound data sets has been a hot topic in recent years, and different methods…”
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SAR Monitoring of Evolving Compound Data Sets Using Activity Landscapes by Iyer, Preeti, Hu, Ye, Bajorath, Jürgen

“…In pharmaceutical research, collections of active compounds directed against specific therapeutic targets usually evolve over time. Small molecule discovery is…”
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