Search Results - "Ivanov, Nikolai"

Phage T7 DNA mimic protein Ocr is a potent inhibitor of BREX defence by Isaev, Artem, Drobiazko, Alena, Sierro, Nicolas, Gordeeva, Julia, Yosef, Ido, Qimron, Udi, Ivanov, Nikolai V, Severinov, Konstantin

“…BREX (for BacteRiophage EXclusion) is a superfamily of common bacterial and archaeal defence systems active against diverse bacteriophages. While the mechanism…”
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Natural and induced variations in transcriptional regulator genes result in low‐nicotine phenotypes in tobacco by Shoji, Tsubasa, Moriyama, Koki, Sierro, Nicolas, Ouadi, Sonia, Ivanov, Nikolai V., Hashimoto, Takashi, Saito, Kazuki

“…SUMMARY In tobacco, the homologous ETHYLENE RESPONSE FACTOR (ERF) transcription factors ERF199 and ERF189 coordinate the transcription of multiple metabolic…”
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Phage T3 overcomes the BREX defense through SAM cleavage and inhibition of SAM synthesis by SAM lyase by Andriianov, Aleksandr, Trigüis, Silvia, Drobiazko, Alena, Sierro, Nicolas, Ivanov, Nikolai V., Selmer, Maria, Severinov, Konstantin, Isaev, Artem

“…Bacteriophage T3 encodes a SAMase that, through cleavage of S-adenosyl methionine (SAM), circumvents the SAM-dependent type I restriction-modification (R-M)…”
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The tobacco genome sequence and its comparison with those of tomato and potato by Sierro, Nicolas, Battey, James N.D., Ouadi, Sonia, Bakaher, Nicolas, Bovet, Lucien, Willig, Adrian, Goepfert, Simon, Peitsch, Manuel C., Ivanov, Nikolai V.

“…The allotetraploid plant Nicotiana tabacum (common tobacco) is a major crop species and a model organism, for which only very fragmented genomic sequences are…”
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Oil-Membrane Protection of Electrochemical Sensors for Fouling- and pH-Insensitive Detection of Lipophilic Analytes by Yuan, Yuchan, DeBrosse, Madeleine, Brothers, Michael, Kim, Steve, Sereda, Alexandra, Ivanov, Nikolai V, Hussain, Saber, Heikenfeld, Jason

“…To take full advantage of the reagent- and label-free sensing capabilities of electrochemical sensors, a frequent and remaining challenge is interference and…”
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Alkaloid chemophenetics and transcriptomics of the Nicotiana genus by Kaminski, Kacper Piotr, Bovet, Lucien, Laparra, Helene, Lang, Gerhard, De Palo, Damien, Sierro, Nicolas, Goepfert, Simon, Ivanov, Nikolai V.

“…In this study, we determined the pyridine alkaloid content (nicotine, nornicotine, anabasine, anatabine, cotinine, and myosmine) of 58 species and 2 subspecies…”
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Genomic Insights into the Evolution of the Nicotine Biosynthesis Pathway in Tobacco by Kajikawa, Masataka, Sierro, Nicolas, Kawaguchi, Haruhiko, Bakaher, Nicolas, Ivanov, Nikolai V., Hashimoto, Takashi, Shoji, Tsubasa

“…In tobacco (Nicotiana tabacum), nicotine is the predominant alkaloid. It is produced in the roots and accumulated mainly in the leaves. Jasmonates play a…”
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Lipid-based biomarkers for CVD, COPD, and aging – A translational perspective by Ekroos, Kim, Lavrynenko, Oksana, Titz, Bjoern, Pater, Calin, Hoeng, Julia, Ivanov, Nikolai V.

“…For many diseases, there is an unmet need for new or better biomarkers for improved disease risk assessment and monitoring, as available markers lack…”
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Acclimation strategies of the green alga Chlorella vulgaris to different light regimes revealed by physiological and comparative proteomic analyses by Cecchin, Michela, Simicevic, Jovan, Chaput, Louise, Hernandez Gil, Manuel, Girolomoni, Laura, Cazzaniga, Stefano, Remacle, Claire, Hoeng, Julia, Ivanov, Nikolai V, Titz, Bjoern, Ballottari, Matteo

“…Abstract Acclimation to different light regimes is at the basis of survival for photosynthetic organisms, regardless of their evolutionary origin. Previous…”
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Shotgun Lipidomics of Rodent Tissues by Lavrynenko, Oksana, Dijon, Sophie, Titz, Björn, Ivanov, Nikolai V

“…Lipids play a vital role as essential components of all prokaryotic and eukaryotic cells. Constant technological improvements in mass spectrometry have made…”
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A 6-month systems toxicology inhalation study in ApoE -/- mice demonstrates reduced cardiovascular effects of E-vapor aerosols compared with cigarette smoke by Szostak, Justyna, Wong, Ee Tsin, Titz, Bjoern, Lee, Tom, Wong, Sin Kei, Low, Tiffany, Lee, Kyeonghee Monica, Zhang, Jingjie, Kumar, Ashutosh, Schlage, Walter K, Guedj, Emmanuel, Phillips, Blaine, Leroy, Patrice, Buettner, Ansgar, Xiang, Yang, Martin, Florian, Sewer, Alain, Kuczaj, Arkadiusz, Ivanov, Nikolai V, Luettich, Karsta, Vanscheeuwijck, Patrick, Peitsch, Manuel C, Hoeng, Julia

“…Smoking cigarettes is harmful to the cardiovascular system. Considerable attention has been paid to the reduced harm potential of alternative…”
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BREX system of Escherichia coli distinguishes self from non-self by methylation of a specific DNA site by Gordeeva, Julia, Morozova, Natalya, Sierro, Nicolas, Isaev, Artem, Sinkunas, Tomas, Tsvetkova, Ksenia, Matlashov, Mikhail, Truncaitė, Lidija, Morgan, Richard D, Ivanov, Nikolai V, Siksnys, Virgis, Zeng, Lanying, Severinov, Konstantin

“…Abstract Prokaryotes evolved numerous systems that defend against predation by bacteriophages. In addition to well-known restriction-modification and…”
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Antiparasitic properties of leaf extracts derived from selected Nicotiana species and Nicotiana tabacum varieties by Schorderet Weber, Sandra, Kaminski, Kacper P., Perret, Jean-Luc, Leroy, Patrice, Mazurov, Anatoly, Peitsch, Manuel C., Ivanov, Nikolai V., Hoeng, Julia

“…Within the traditional pharmacopeia, tobacco (Nicotiana spp.) is often cited as an efficient pesticide. This activity is generally attributed to nicotine, but…”
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Proteomics and Lipidomics in Inflammatory Bowel Disease Research: From Mechanistic Insights to Biomarker Identification by Titz, Bjoern, Gadaleta, Raffaella M, Lo Sasso, Giuseppe, Elamin, Ashraf, Ekroos, Kim, Ivanov, Nikolai V, Peitsch, Manuel C, Hoeng, Julia

“…Inflammatory bowel disease (IBD) represents a group of progressive disorders characterized by recurrent chronic inflammation of the gut. Ulcerative colitis and…”
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Fractionation and Extraction Optimization of Potentially Valuable Compounds and Their Profiling in Six Varieties of Two Nicotiana Species by Laszlo, Csaba, Kaminski, Kacper, Guan, Haifeng, Fatarova, Maria, Wei, Jianbing, Bergounioux, Alexandre, Schlage, Walter K, Schorderet-Weber, Sandra, Guy, Philippe A, Ivanov, Nikolai V, Lamottke, Kai, Hoeng, Julia

“…There is an increasingly urgent call to shift industrial processes from fossil fuel feedstock to sustainable bio-based resources. This change becomes of high…”
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Interrogating the microbiome: experimental and computational considerations in support of study reproducibility by Poussin, Carine, Sierro, Nicolas, Boué, Stéphanie, Battey, James, Scotti, Elena, Belcastro, Vincenzo, Peitsch, Manuel C., Ivanov, Nikolai V., Hoeng, Julia

“…[Display omitted] •Growing evidence indicates that the microbiome plays an important role in health and disease.•Reliable and meaningful scientific conclusions…”
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Identification of Granatane Alkaloids from Duboisia myoporoides (Solanaceae) using Molecular Networking and Semisynthesis by Dutertre, Quentin, Guy, Philippe A., Sutour, Sylvain, Peitsch, Manuel C., Ivanov, Nikolai V., Glauser, Gaetan, von Reuss, Stephan

“…The Solanaceae plant family contains at least 98 genera and over 2700 species. The Duboisia genus stands out for its ability to produce pyridine and tropane…”
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Chromosome-scale assemblies of S. malaccense, S. aqueum, S. jambos, and S. syzygioides provide insights into the evolution of Syzygium genomes by Ouadi, Sonia, Sierro, Nicolas, Kessler, Felix, Ivanov, Nikolai V.

“…Syzygium is a large and diverse tree genus in the Myrtaceae family. Genome assemblies for clove ( Syzygium aromaticum , 370 Mb) and sea apple ( Syzygium grande…”
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Dissection of Cancer Mutational Signatures with Individual Components of Cigarette Smoking by Mingard, Cécile, Battey, James N. D., Takhaveev, Vakil, Blatter, Katharina, Hürlimann, Vera, Sierro, Nicolas, Ivanov, Nikolai V., Sturla, Shana J.

“…Tobacco smoke delivers a complex mixture of hazardous and potentially hazardous chemicals. Some of these may induce the formation of DNA mutations, which…”
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Crowdsourced benchmarking of taxonomic metagenome profilers: lessons learned from the sbv IMPROVER Microbiomics challenge by Poussin, Carine, Khachatryan, Lusine, Sierro, Nicolas, Narsapuram, Vijay Kumar, Meyer, Fernando, Kaikala, Vinay, Chawla, Vandna, Muppirala, Usha, Kumar, Sunil, Belcastro, Vincenzo, Battey, James N. D, Scotti, Elena, Boué, Stéphanie, McHardy, Alice C, Peitsch, Manuel C, Ivanov, Nikolai V, Hoeng, Julia

“…Abstract Background Selection of optimal computational strategies for analyzing metagenomics data is a decisive step in determining the microbial composition…”
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