Search Results - "Huson, D H"

SplitsTree: analyzing and visualizing evolutionary data by Huson, D H

“…Real evolutionary data often contain a number of different and sometimes conflicting phylogenetic signals, and thus do not always clearly support a unique…”
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Systematic enumeration of crystalline networks by Klinowski, Jacek, Friedrichs, Olaf Delgado, Dress, Andreas W. M, Huson, Daniel H, Mackay, Alan L

“…The systematic enumeration of all possible networks of atoms ininorganic structures is of considerable interest. Of particular importance are the 4-connected…”
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Estimating the association between antibiotic exposure and colonization with extended-spectrum β-lactamase-producing Gram-negative bacteria using machine learning methods: a multicentre, prospective cohort study by Tacconelli, E., Górska, A., De Angelis, G., Lammens, C., Restuccia, G., Schrenzel, J., Huson, D.H., Carević, B., Preoţescu, L., Carmeli, Y., Kazma, M., Spanu, T., Carrara, E., Malhotra-Kumar, S., Gladstone, B.P.

“…The aim of the study was to measure the impact of antibiotic exposure on the acquisition of colonization with extended-spectrum β-lactamase-producing…”
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CLUSEAN: A computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters by Weber, T., Rausch, C., Lopez, P., Hoof, I., Gaykova, V., Huson, D.H., Wohlleben, W.

“…Bacterial secondary metabolites are an important source of antimicrobial and cytostatic drugs. These molecules are often synthesized in a stepwise fashion by…”
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A covariotide model explains apparent phylogenetic structure of oxygenic photosynthetic lineages by Lockhart, P J, Steel, M A, Barbrook, A C, Huson, D H, Charleston, M A, Howe, C J

“…The aims of the work were (1) to develop statistical tests to identify whether substitution takes place under a covariotide model in sequences used for…”
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Dynamics of the human gut phageome during antibiotic treatment by Górska, A., Peter, S., Willmann, M., Autenrieth, I., Schlaberg, R., Huson, D.H

“…Bacterial viruses contribute to the dynamics of the microbiome communities, as they are involved in the horizontal gene transfer. Previously we studied changes…”
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Whole-genome prokaryotic phylogeny by Henz, Stefan R., Huson, Daniel H., Auch, Alexander F., Nieselt-Struwe, Kay, Schuster, Stephan C.

“…Current understanding of the phylogeny of prokaryotes is based on the comparison of the highly conserved small ssu-rRNA subunit and similar regions. Although…”
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Computing recombination networks from binary sequences by Huson, Daniel H., Kloepper, Tobias H.

“…Motivation: Phylogenetic networks are becoming an important tool in molecular evolution, as the evolutionary role of reticulate events, such as hybridization,…”
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Constructing splits graphs by Dress, A.W.M., Huson, D.H.

“…Phylogenetic trees correspond one-to-one to compatible systems of splits and so splits play an important role in theoretical and computational aspects of…”
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Phylogenetic super-networks from partial trees by Huson, D.H., Dezulian, T., Klopper, T., Steel, M.A.

“…In practice, one is often faced with incomplete phylogenetic data, such as a collection of partial trees or partial splits. This paper poses the problem of…”
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Disk-covering, a fast-converging method for phylogenetic tree reconstruction by Huson, D H, Nettles, S M, Warnow, T J

“…The evolutionary history of a set of species is represented by a phylogenetic tree, which is a rooted, leaf-labeled tree, where internal nodes represent…”
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Two finiteness theorems for periodic tilings of d-dimensional euclidean space by Dolbilin, N. P., Dress, A. W. M., Huson, D. H.

“…Consider the d-dimensional Euclidean space . Two main results are presented: First, for any N ∈ ℕ, the number of types of periodic equivariant tilings (T, Γ)…”
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4-Regular Vertex-Transitive Tilings of E 3 by Delgado Friedrichs, O., Huson, D. H.

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Tiling Space by Platonic Solids, I by Delgado Friedrichs, O., Huson, D. H.

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Application of phylogenetic networks in evolutionary studies by Huson, Daniel H, Bryant, David

“…The evolutionary history of a set of taxa is usually represented by a phylogenetic tree, and this model has greatly facilitated the discussion and testing of…”
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Whole-Genome Shotgun Assembly and Comparison of Human Genome Assemblies by Istrail, Sorin, Sutton, Granger G., Florea, Liliana, Halpern, Aaron L., Mobarry, Clark M., Lippert, Ross, Walenz, Brian, Shatkay, Hagit, Dew, Ian, Miller, Jason R., Flanigan, Michael J., Edwards, Nathan J., Bolanos, Randall, Fasulo, Daniel, Halldorsson, Bjarni V., Hannenhalli, Sridhar, Turner, Russell, Yooseph, Shibu, Lu, Fu, Nusskern, Deborah R., Shue, Bixiong Chris, Zheng, Xiangqun Holly, Zhong, Fei, Delcher, Arthur L., Huson, Daniel H., Kravitz, Saul A., Mouchard, Laurent, Reinert, Knut, Remington, Karin A., Clark, Andrew G., Waterman, Michael S., Eichler, Evan E., Adams, Mark D., Hunkapiller, Michael W., Myers, Eugene W., Venter, J. Craig

“…We report a whole-genome shotgun assembly (called WGSA) of the human genome generated at Celera in 2001. The Celera-generated shotgun data set consisted of 27…”
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Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs) by Rausch, Christian, Weber, Tilmann, Kohlbacher, Oliver, Wohlleben, Wolfgang, Huson, Daniel H.

“…We present a new support vector machine (SVM)-based approach to predict the substrate specificity of subtypes of a given protein sequence family. We…”
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Drawing Rooted Phylogenetic Networks by Huson, D.H.

“…The evolutionary history of a collection of species is usually represented by a phylogenetic tree. Sometimes, phylogenetic networks are used as a means of…”
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CLUSEAN : A computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters: Functional Genome Research on Bacteria Relevant for Agriculture, Environment and Biotechnology by WEBER, T, RAUSCH, C, LOPEZ, P, HOOF, I, GAYKOVA, V, HUSON, D. H, WOHLLEBEN, W

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Metagenomics to Paleogenomics: Large-Scale Sequencing of Mammoth DNA by Poinar, Hendrik N, Schwarz, Carsten, Qi, Ji, Shapiro, Beth, MacPhee, Ross D. E, Buigues, Bernard, Tikhonov, Alexei, Huson, Daniel H, Tomsho, Lynn P, Auch, Alexander, Rampp, Markus, Miller, Webb, Schuster, Stephan C

“…We sequenced 28 million base pairs of DNA in a metagenomics approach, using a woolly mammoth (Mammuthus primigenius) sample from Siberia. As a result of…”
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