Search Results - "Huse, Susan M"

A core human microbiome as viewed through 16S rRNA sequence clusters by Huse, Susan M, Ye, Yuzhen, Zhou, Yanjiao, Fodor, Anthony A

“…We explore the microbiota of 18 body sites in over 200 individuals using sequences amplified V1-V3 and the V3-V5 small subunit ribosomal RNA (16S)…”
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A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes by Amaral-Zettler, Linda A, McCliment, Elizabeth A, Ducklow, Hugh W, Huse, Susan M

“…Massively parallel pyrosequencing of amplicons from the V6 hypervariable regions of small-subunit (SSU) ribosomal RNA (rRNA) genes is commonly used to assess…”
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Ironing out the wrinkles in the rare biosphere through improved OTU clustering by Huse, Susan M., Welch, David Mark, Morrison, Hilary G., Sogin, Mitchell L.

“…Summary Deep sequencing of PCR amplicon libraries facilitates the detection of low‐abundance populations in environmental DNA surveys of complex microbial…”
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Defining the healthy "core microbiome" of oral microbial communities by Zaura, Egija, Keijser, Bart J F, Huse, Susan M, Crielaard, Wim

“…Most studies examining the commensal human oral microbiome are focused on disease or are limited in methodology. In order to diagnose and treat diseases at an…”
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Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing by Huse, Susan M, Dethlefsen, Les, Huber, Julie A, Mark Welch, David, Welch, David Mark, Relman, David A, Sogin, Mitchell L

“…Massively parallel pyrosequencing of hypervariable regions from small subunit ribosomal RNA (SSU rRNA) genes can sample a microbial community two or three…”
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Oligotyping analysis of the human oral microbiome by Eren, A Murat, Borisy, Gary G, Huse, Susan M, Mark Welch, Jessica L

“…The Human Microbiome Project provided a census of bacterial populations in healthy individuals, but an understanding of the biomedical significance of this…”
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Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems by Zinger, Lucie, Amaral-Zettler, Linda A, Fuhrman, Jed A, Horner-Devine, M Claire, Huse, Susan M, Welch, David B Mark, Martiny, Jennifer B H, Sogin, Mitchell, Boetius, Antje, Ramette, Alban

“…Marine microbial communities have been essential contributors to global biomass, nutrient cycling, and biodiversity since the early history of Earth, but so…”
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Community Structures of Fecal Bacteria in Cattle from Different Animal Feeding Operations by SHANKS, Orin C, KELTY, Catherine A, ARCHIBEQUE, Shawn, JENKINS, Michael, NEWTON, Ryan J, MCLELLAN, Sandra L, HUSE, Susan M, SOGIN, Mitchell L

“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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Accuracy and quality of massively parallel DNA pyrosequencing by Huse, Susan M, Huber, Julie A, Morrison, Hilary G, Sogin, Mitchell L, Welch, David Mark

“…Massively parallel pyrosequencing systems have increased the efficiency of DNA sequencing, although the published per-base accuracy of a Roche GS20 is only…”
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Reproducible Community Dynamics of the Gastrointestinal Microbiota following Antibiotic Perturbation by ANTONOPOULOS, Dionysios A, HUSE, Susan M, MORRISON, Hilary G, SCHMIDT, Thomas M, SOGIN, Mitchell L, YOUNG, Vincent B

“…Classifications Services IAI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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MCF-7 Human Breast Cancer Cells Form Differentiated Microtissues in Scaffold-Free Hydrogels by Vantangoli, Marguerite M, Madnick, Samantha J, Huse, Susan M, Weston, Paula, Boekelheide, Kim

“…Three-dimensional (3D) cultures are increasing in use because of their ability to represent in vivo human physiology when compared to monolayer two-dimensional…”
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Microbial Diversity in the Deep Sea and the Underexplored "Rare Biosphere" by Sogin, Mitchell L., Morrison, Hilary G., Huber, Julie A., Welch, David Mark, Huse, Susan M., Neal, Phillip R., Arrieta, Jesus M., Herndl, Gerhard J.

“…The evolution of marine microbes over billions of years predicts that the composition of microbial communities should be much greater than the published…”
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VAMPS: a website for visualization and analysis of microbial population structures by Huse, Susan M, Mark Welch, David B, Voorhis, Andy, Shipunova, Anna, Morrison, Hilary G, Eren, A Murat, Sogin, Mitchell L

“…The advent of next-generation DNA sequencing platforms has revolutionized molecular microbial ecology by making the detailed analysis of complex communities…”
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Comparison of the Microbial Community Structures of Untreated Wastewaters from Different Geographic Locales by SHANKS, Orin C, NEWTON, Ryan J, KELTY, Catherine A, HUSE, Susan M, SOGIN, Mitchell L, MCLELLAN, Sandra L

“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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Microbial Population Structures in the Deep Marine Biosphere by Huber, Julie A, Welch, David B. Mark, Morrison, Hilary G, Huse, Susan M, Neal, Phillip R, Butterfield, David A, Sogin, Mitchell L

“…The analytical power of environmental DNA sequences for modeling microbial ecosystems depends on accurate assessments of population structure, including…”
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Global distribution and diversity of marine Verrucomicrobia by Freitas, Sara, Hatosy, Stephen, Fuhrman, Jed A, Huse, Susan M, Mark Welch, David B, Sogin, Mitchell L, Martiny, Adam C

“…Verrucomicrobia is a bacterial phylum that is commonly detected in soil, but little is known about the distribution and diversity of this phylum in the marine…”
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Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences by Rideout, Jai Ram, He, Yan, Navas-Molina, Jose A, Walters, William A, Ursell, Luke K, Gibbons, Sean M, Chase, John, McDonald, Daniel, Gonzalez, Antonio, Robbins-Pianka, Adam, Clemente, Jose C, Gilbert, Jack A, Huse, Susan M, Zhou, Hong-Wei, Knight, Rob, Caporaso, J Gregory

“…We present a performance-optimized algorithm, subsampled open-reference OTU picking, for assigning marker gene (e.g., 16S rRNA) sequences generated on…”
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Diversity and dynamics of rare and of resident bacterial populations in coastal sands by Gobet, Angélique, Böer, Simone I, Huse, Susan M, van Beusekom, Justus E E, Quince, Christopher, Sogin, Mitchell L, Boetius, Antje, Ramette, Alban

“…Coastal sands filter and accumulate organic and inorganic materials from the terrestrial and marine environment, and thus provide a high diversity of microbial…”
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Shifts in the microbial community composition of Gulf Coast beaches following beach oiling by Newton, Ryan J, Huse, Susan M, Morrison, Hilary G, Peake, Colin S, Sogin, Mitchell L, McLellan, Sandra L

“…Microorganisms associated with coastal sands serve as a natural biofilter, providing essential nutrient recycling in nearshore environments and acting to…”
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Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health by Crielaard, Wim, Zaura, Egija, Schuller, Annemarie A, Huse, Susan M, Montijn, Roy C, Keijser, Bart J F

“…An understanding of the relation of commensal microbiota to health is essential in preventing disease. Here we studied the oral microbial composition of…”
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