Search Results - "Hurwitz, David I"

CDD/SPARCLE: the conserved domain database in 2020 by Lu, Shennan, Wang, Jiyao, Chitsaz, Farideh, Derbyshire, Myra K, Geer, Renata C, Gonzales, Noreen R, Gwadz, Marc, Hurwitz, David I, Marchler, Gabriele H, Song, James S, Thanki, Narmada, Yamashita, Roxanne A, Yang, Mingzhang, Zhang, Dachuan, Zheng, Chanjuan, Lanczycki, Christopher J, Marchler-Bauer, Aron

“…Abstract As NLM’s Conserved Domain Database (CDD) enters its 20th year of operations as a publicly available resource, CDD curation staff continues to develop…”
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CDD/SPARCLE: functional classification of proteins via subfamily domain architectures by Marchler-Bauer, Aron, Bo, Yu, Han, Lianyi, He, Jane, Lanczycki, Christopher J, Lu, Shennan, Chitsaz, Farideh, Derbyshire, Myra K, Geer, Renata C, Gonzales, Noreen R, Gwadz, Marc, Hurwitz, David I, Lu, Fu, Marchler, Gabriele H, Song, James S, Thanki, Narmada, Wang, Zhouxi, Yamashita, Roxanne A, Zhang, Dachuan, Zheng, Chanjuan, Geer, Lewis Y, Bryant, Stephen H

“…NCBI's Conserved Domain Database (CDD) aims at annotating biomolecular sequences with the location of evolutionarily conserved protein domain footprints, and…”
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CDD: conserved domains and protein three-dimensional structure by Marchler-Bauer, Aron, Zheng, Chanjuan, Chitsaz, Farideh, Derbyshire, Myra K, Geer, Lewis Y, Geer, Renata C, Gonzales, Noreen R, Gwadz, Marc, Hurwitz, David I, Lanczycki, Christopher J, Lu, Fu, Lu, Shennan, Marchler, Gabriele H, Song, James S, Thanki, Narmada, Yamashita, Roxanne A, Zhang, Dachuan, Bryant, Stephen H

“…CDD, the Conserved Domain Database, is part of NCBI's Entrez query and retrieval system and is also accessible via…”
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CDD: NCBI's conserved domain database by Marchler-Bauer, Aron, Derbyshire, Myra K, Gonzales, Noreen R, Lu, Shennan, Chitsaz, Farideh, Geer, Lewis Y, Geer, Renata C, He, Jane, Gwadz, Marc, Hurwitz, David I, Lanczycki, Christopher J, Lu, Fu, Marchler, Gabriele H, Song, James S, Thanki, Narmada, Wang, Zhouxi, Yamashita, Roxanne A, Zhang, Dachuan, Zheng, Chanjuan, Bryant, Stephen H

“…NCBI's CDD, the Conserved Domain Database, enters its 15(th) year as a public resource for the annotation of proteins with the location of conserved domain…”
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CDD: a Conserved Domain Database for the functional annotation of proteins by Marchler-Bauer, Aron, Lu, Shennan, Anderson, John B, Chitsaz, Farideh, Derbyshire, Myra K, DeWeese-Scott, Carol, Fong, Jessica H, Geer, Lewis Y, Geer, Renata C, Gonzales, Noreen R, Gwadz, Marc, Hurwitz, David I, Jackson, John D, Ke, Zhaoxi, Lanczycki, Christopher J, Lu, Fu, Marchler, Gabriele H, Mullokandov, Mikhail, Omelchenko, Marina V, Robertson, Cynthia L, Song, James S, Thanki, Narmada, Yamashita, Roxanne A, Zhang, Dachuan, Zhang, Naigong, Zheng, Chanjuan, Bryant, Stephen H

“…NCBI's Conserved Domain Database (CDD) is a resource for the annotation of protein sequences with the location of conserved domain footprints, and functional…”
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CDD: specific functional annotation with the Conserved Domain Database by Marchler-Bauer, Aron, Anderson, John B, Chitsaz, Farideh, Derbyshire, Myra K, DeWeese-Scott, Carol, Fong, Jessica H, Geer, Lewis Y, Geer, Renata C, Gonzales, Noreen R, Gwadz, Marc, He, Siqian, Hurwitz, David I, Jackson, John D, Ke, Zhaoxi, Lanczycki, Christopher J, Liebert, Cynthia A, Liu, Chunlei, Lu, Fu, Lu, Shennan, Marchler, Gabriele H, Mullokandov, Mikhail, Song, James S, Tasneem, Asba, Thanki, Narmada, Yamashita, Roxanne A, Zhang, Dachuan, Zhang, Naigong, Bryant, Stephen H

“…NCBI's Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains…”
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CDD: a conserved domain database for interactive domain family analysis by Marchler-Bauer, Aron, Anderson, John B, Derbyshire, Myra K, DeWeese-Scott, Carol, Gonzales, Noreen R, Gwadz, Marc, Luning Hao, He, Siqian, Hurwitz, David I, Jackson, John D, Ke, Zhaoxi, Krylov, Dmitri, Lanczycki, Christopher J, Liebert, Cynthia A, Liu, Chunlei

“…The conserved domain database (CDD) is part of NCBI's Entrez database system and serves as a primary resource for the annotation of conserved domain footprints…”
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CDD: a conserved domain database for interactive domain family analysis by Marchler-Bauer, Aron, Anderson, John B, Derbyshire, Myra K, DeWeese-Scott, Carol, Gonzales, Noreen R, Gwadz, Marc, Hao, Luning, He, Siqian, Hurwitz, David I, Jackson, John D, Ke, Zhaoxi, Krylov, Dmitri, Lanczycki, Christopher J, Liebert, Cynthia A, Liu, Chunlei, Lu, Fu, Lu, Shennan, Marchler, Gabriele H, Mullokandov, Mikhail, Song, James S, Thanki, Narmada, Yamashita, Roxanne A, Yin, Jodie J, Zhang, Dachuan, Bryant, Stephen H

“…The conserved domain database (CDD) is part of NCBI's Entrez database system and serves as a primary resource for the annotation of conserved domain footprints…”
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CDD: a Conserved Domain Database for protein classification by Marchler-Bauer, Aron, Anderson, John B., Cherukuri, Praveen F., DeWeese-Scott, Carol, Geer, Lewis Y., Gwadz, Marc, He, Siqian, Hurwitz, David I., Jackson, John D., Ke, Zhaoxi, Lanczycki, Christopher J., Liebert, Cynthia A., Liu, Chunlei, Lu, Fu, Marchler, Gabriele H., Mullokandov, Mikhail, Shoemaker, Benjamin A., Simonyan, Vahan, Song, James S., Thiessen, Paul A., Yamashita, Roxanne A., Yin, Jodie J., Zhang, Dachuan, Bryant, Stephen H.

“…The Conserved Domain Database (CDD) is the protein classification component of NCBI's Entrez query and retrieval system. CDD is linked to other Entrez…”
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CDD: a curated Entrez database of conserved domain alignments by Marchler-Bauer, Aron, Anderson, John B., DeWeese-Scott, Carol, Fedorova, Natalie D., Geer, Lewis Y., He, Siqian, Hurwitz, David I., Jackson, John D., Jacobs, Aviva R., Lanczycki, Christopher J., Liebert, Cynthia A., Liu, Chunlei, Madej, Thomas, Marchler, Gabriele H., Mazumder, Raja, Nikolskaya, Anastasia N., Panchenko, Anna R., Rao, Bachoti S., Shoemaker, Benjamin A., Simonyan, Vahan, Song, James S., Thiessen, Paul A., Vasudevan, Sona, Wang, Yanli, Yamashita, Roxanne A., Yin, Jodie J., Bryant, Stephen H.

“…The Conserved Domain Database (CDD) is now indexed as a separate database within the Entrez system and linked to other Entrez databases such as MEDLINE®. This…”
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MMDB: Entrez's 3D-structure database by Chen, Jie, Anderson, John B., DeWeese-Scott, Carol, Fedorova, Natalie D., Geer, Lewis Y., He, Siqian, Hurwitz, David I., Jackson, John D., Jacobs, Aviva R., Lanczycki, Christopher J., Liebert, Cynthia A., Liu, Chunlei, Madej, Thomas, Marchler-Bauer, Aron, Marchler, Gabriele H., Mazumder, Raja, Nikolskaya, Anastasia N., Rao, Bachoti S., Panchenko, Anna R., Shoemaker, Benjamin A., Simonyan, Vahan, Song, James S., Thiessen, Paul A., Vasudevan, Sona, Wang, Yanli, Yamashita, Roxanne A., Yin, Jodie J., Bryant, Stephen H.

“…Three-dimensional structures are now known within most protein families and it is likely, when searching a sequence database, that one will identify a homolog…”
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MMDB: Entrez's 3D-structure database by Wang, Yanli, Anderson, John B, Chen, Jie, Geer, Lewis Y, He, Siqian, Hurwitz, David I, Liebert, Cynthia A, Madej, Thomas, Marchler, Gabriele H, Marchler-Bauer, Aron, Panchenko, Anna R, Shoemaker, Benjamin A, Song, James S, Thiessen, Paul A, Yamashita, Roxanne A, Bryant, Stephen H

“…Three-dimensional structures are now known within many protein families and it is quite likely, in searching a sequence database, that one will encounter a…”
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Searching by index for similar sequences: the SEQR algorithm by Hurwitz, David I, Han, Lianyi, Geer, Lewis Y

“…This paper describes a method to efficiently retrieve protein database sequences similar to a query sequence, while allowing for significant numbers of…”
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