Search Results - "Hulse, Amanda M"

Genetic variants contribute to gene expression variability in humans by Hulse, Amanda M, Cai, James J

“…Expression quantitative trait loci (eQTL) studies have established convincing relationships between genetic variants and gene expression. Most of these studies…”
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Two pathogen loci determine Blumeria graminis f. sp. tritici virulence to wheat resistance gene Pm1a by Kloppe, Tim, Whetten, Rebecca B., Kim, Saet‐Byul, Powell, Oliver R., Lück, Stefanie, Douchkov, Dimitar, Whetten, Ross W., Hulse‐Kemp, Amanda M., Balint‐Kurti, Peter, Cowger, Christina

“…Summary Blumeria graminis f. sp. tritici (Bgt) is a globally important fungal pathogen of wheat that can rapidly evolve to defeat wheat powdery mildew (Pm)…”
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Sequencing‐Based Bin Map Construction of a Tomato Mapping Population, Facilitating High‐Resolution Quantitative Trait Loci Detection by Gonda, Itay, Ashrafi, Hamid, Lyon, David A., Strickler, Susan R., Hulse‐Kemp, Amanda M., Ma, Qiyue, Sun, Honghe, Stoffel, Kevin, Powell, Adrian F., Futrell, Stephanie, Thannhauser, Theodore W., Fei, Zhangjun, Van Deynze, Allen E., Mueller, Lukas A., Giovannoni, James J., Foolad, Majid R.

“…Core Ideas Construction of a GBS‐based high‐resolution genetic map of a tomato RIL population Development of an analytical pipeline to localize crossover…”
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Initiation of genomics-assisted breeding in Virginia-type peanuts through the generation of a de novo reference genome and informative markers by Newman, Cassondra S, Andres, Ryan J, Youngblood, Ramey C, Campbell, Jacqueline D, Simpson, Sheron A, Cannon, Steven B, Scheffler, Brian E, Oakley, Andrew T, Hulse-Kemp, Amanda M, Dunne, Jeffrey C

“…Virginia-type peanut, , is the second largest market class of peanut cultivated in the United States. It is mainly used for large-seeded, in-shell products…”
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An anchored chromosome‐scale genome assembly of spinach improves annotation and reveals extensive gene rearrangements in euasterids by Hulse‐Kemp, Amanda M, Bostan, Hamed, Chen, Shiyu, Ashrafi, Hamid, Stoffel, Kevin, Sanseverino, Walter, Li, Linzhou, Cheng, Shifeng, Schatz, Michael C., Garvin, Tyler, du Toit, Lindsey J., Tseng, Elizabeth, Chin, Jason, Iorizzo, Massimo, Van Deynze, Allen

“…Spinach (Spinacia oleracea L.) is a member of the Caryophyllales family, a basal eudicot asterid that consists of sugar beet (Beta vulgaris L. subsp…”
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Efficient imaging and computer vision detection of two cell shapes in young cotton fibers by Graham, Benjamin P., Park, Jeremy, Billings, Grant T., Hulse‐Kemp, Amanda M., Haigler, Candace H., Lobaton, Edgar

“…Premise The shape of young cotton (Gossypium) fibers varies within and between commercial cotton species, as revealed by previous detailed analyses of one…”
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Graph-based pangenomics maximizes genotyping density and reveals structural impacts on fungal resistance in melon by Vaughn, Justin N., Branham, Sandra E., Abernathy, Brian, Hulse-Kemp, Amanda M., Rivers, Adam R., Levi, Amnon, Wechter, William P.

“…The genomic sequences segregating in experimental populations are often highly divergent from the community reference and from one another. Such divergence is…”
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Long-read, chromosome-scale assembly of Vitis rotundifolia cv. Carlos and its unique resistance to Xylella fastidiosa subsp. fastidiosa by Huff, Matthew, Hulse-Kemp, Amanda M, Scheffler, Brian E, Youngblood, Ramey C, Simpson, Sheron A, Babiker, Ebrahiem, Staton, Margaret

“…Muscadine grape (Vitis rotundifolia) is resistant to many of the pathogens that negatively impact the production of common grape (V. vinifera), including the…”
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The spinach YY genome reveals sex chromosome evolution, domestication, and introgression history of the species by Ma, Xiaokai, Yu, Li'ang, Fatima, Mahpara, Wadlington, William H, Hulse-Kemp, Amanda M, Zhang, Xingtan, Zhang, Shengcheng, Xu, Xindan, Wang, Jingjing, Huang, Huaxing, Lin, Jing, Deng, Ban, Liao, Zhenyang, Yang, Zhenhui, Ma, Yanhong, Tang, Haibao, Van Deynze, Allen, Ming, Ray

“…Spinach (Spinacia oleracea L.) is a dioecious species with an XY sex chromosome system, but its Y chromosome has not been fully characterized. Our knowledge…”
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A first look at the ability to use genomic prediction for improving the ratooning ability of sugarcane by Islam, Md. Sariful, Corak, Keo, McCord, Per, Hulse-Kemp, Amanda M., Lipka, Alexander E.

“…The sugarcane ratooning ability (RA) is the most important target trait for breeders seeking to enhance the profitability of sugarcane production by reducing…”
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Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning by Delorean, Emily E., Youngblood, Ramey C., Simpson, Sheron A., Schoonmaker, Ashley N., Scheffler, Brian E., Rutter, William B., Hulse-Kemp, Amanda M.

“…As sequencing costs decrease and availability of high fidelity long-read sequencing increases, generating experiment specific de novo genome assemblies becomes…”
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Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library by Hulse-Kemp, Amanda M., Maheshwari, Shamoni, Stoffel, Kevin, Hill, Theresa A., Jaffe, David, Williams, Stephen R., Weisenfeld, Neil, Ramakrishnan, Srividya, Kumar, Vijay, Shah, Preyas, Schatz, Michael C., Church, Deanna M., Van Deynze, Allen

“…Linked-Read sequencing technology has recently been employed successfully for de novo assembly of human genomes, however, the utility of this technology for…”
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High-quality reference genome and annotation aids understanding of berry development for evergreen blueberry (Vaccinium darrowii) by Yu, Jiali, Hulse-Kemp, Amanda M., Babiker, Ebrahiem, Staton, Margaret

“…Vaccinium darrowii Camp (2 n  = 2 x  = 24) is a native North American blueberry species and an important source of traits such as low chill requirement in…”
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Leveraging National Germplasm Collections to Determine Significantly Associated Categorical Traits in Crops: Upland and Pima Cotton as a Case Study by Restrepo-Montoya, Daniel, Hulse-Kemp, Amanda M, Scheffler, Jodi A, Haigler, Candace H, Hinze, Lori L, Love, Janna, Percy, Richard G, Jones, Don C, Frelichowski, James

“…Observable qualitative traits are relatively stable across environments and are commonly used to evaluate crop genetic diversity. Recently, molecular markers…”
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DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton by Page, Justin T, Liechty, Zach S, Alexander, Rich H, Clemons, Kimberly, Hulse-Kemp, Amanda M, Ashrafi, Hamid, Van Deynze, Allen, Stelly, David M, Udall, Joshua A

“…Allotetraploid cotton species are a vital source of spinnable fiber for textiles. The polyploid nature of the cotton genome raises many evolutionary questions…”
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Sub genome anchored physical frameworks of the allotetraploid Upland cotton (Gossypium hirsutum L.) genome, and an approach toward reference-grade assemblies of polyploids by Saski, Christopher A., Scheffler, Brian E., Hulse-Kemp, Amanda M., Liu, Bo, Song, Qingxin, Ando, Atsumi, Stelly, David M., Scheffler, Jodi A., Grimwood, Jane, Jones, Don C., Peterson, Daniel G., Schmutz, Jeremy, Chen, Z. Jeffery

“…Like those of many agricultural crops, the cultivated cotton is an allotetraploid and has a large genome (~2.5 gigabase pairs). The two sub genomes, A and D,…”
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A Long‐Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery by Ashrafi, Hamid, Hulse‐Kemp, Amanda M., Wang, Fei, Yang, S. Samuel, Guan, Xueying, Jones, Don C., Matvienko, Marta, Mockaitis, Keithanne, Chen, Z. Jeffrey, Stelly, David M., Van Deynze, Allen

“…Upland cotton (Gossypium hirsutum L.) has a narrow germplasm base, which constrains marker development and hampers intraspecific breeding. A pressing need…”
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Detecting Cotton Leaf Curl Virus Resistance Quantitative Trait Loci in Gossypium hirsutum and iCottonQTL a New R/Shiny App to Streamline Genetic Mapping by Schoonmaker, Ashley N, Hulse-Kemp, Amanda M, Youngblood, Ramey C, Rahmat, Zainab, Atif Iqbal, Muhammad, Rahman, Mehboob-Ur, Kochan, Kelli J, Scheffler, Brian E, Scheffler, Jodi A

“…Cotton leaf curl virus (CLCuV) causes devastating losses to fiber production in Central Asia. Viral spread across Asia in the last decade is causing concern…”
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Haplotype phasing after joint estimation of recombination and linkage disequilibrium in breeding populations by Gomez-Raya, Luis, Hulse, Amanda M, Thain, David, Rauw, Wendy M

“…A novel method for haplotype phasing in families after joint estimation of recombination fraction and linkage disequilibrium is developed. Results from Monte…”
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Outlook for Implementation of Genomics-Based Selection in Public Cotton Breeding Programs by Billings, Grant T, Jones, Michael A, Rustgi, Sachin, Bridges, Jr, William C, Holland, James B, Hulse-Kemp, Amanda M, Campbell, B Todd

“…Researchers have used quantitative genetics to map cotton fiber quality and agronomic performance loci, but many alleles may be population or…”
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