Search Results - "Huang, Kun D."

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations by Karcher, Nicolai, Pasolli, Edoardo, Asnicar, Francesco, Huang, Kun D, Tett, Adrian, Manara, Serena, Armanini, Federica, Bain, Debbie, Duncan, Sylvia H, Louis, Petra, Zolfo, Moreno, Manghi, Paolo, Valles-Colomer, Mireia, Raffaetà, Roberta, Rota-Stabelli, Omar, Collado, Maria Carmen, Zeller, Georg, Falush, Daniel, Maixner, Frank, Walker, Alan W, Huttenhower, Curtis, Segata, Nicola

“…Eubacterium rectale is one of the most prevalent human gut bacteria, but its diversity and population genetics are not well understood because large-scale…”
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Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter by Granehäll, Lena, Huang, Kun D, Tett, Adrian, Manghi, Paolo, Paladin, Alice, O'Sullivan, Niall, Rota-Stabelli, Omar, Segata, Nicola, Zink, Albert, Maixner, Frank

“…Dental calculus (mineralised dental plaque) preserves many types of microfossils and biomolecules, including microbial and host DNA, and ancient calculus are…”
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MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice by Manghi, Paolo, Blanco-Míguez, Aitor, Manara, Serena, NabiNejad, Amir, Cumbo, Fabio, Beghini, Francesco, Armanini, Federica, Golzato, Davide, Huang, Kun D., Thomas, Andrew M., Piccinno, Gianmarco, Punčochář, Michal, Zolfo, Moreno, Lesker, Till R., Bredon, Marius, Planchais, Julien, Glodt, Jeremy, Valles-Colomer, Mireia, Koren, Omry, Pasolli, Edoardo, Asnicar, Francesco, Strowig, Till, Sokol, Harry, Segata, Nicola

“…Mouse models are key tools for investigating host-microbiome interactions. However, shotgun metagenomics can only profile a limited fraction of the mouse gut…”
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Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4 by Blanco-Míguez, Aitor, Beghini, Francesco, Cumbo, Fabio, McIver, Lauren J., Thompson, Kelsey N., Zolfo, Moreno, Manghi, Paolo, Dubois, Leonard, Huang, Kun D., Thomas, Andrew Maltez, Nickols, William A., Piccinno, Gianmarco, Piperni, Elisa, Punčochář, Michal, Valles-Colomer, Mireia, Tett, Adrian, Giordano, Francesca, Davies, Richard, Wolf, Jonathan, Berry, Sarah E., Spector, Tim D., Franzosa, Eric A., Pasolli, Edoardo, Asnicar, Francesco, Huttenhower, Curtis, Segata, Nicola

“…Metagenomic assembly enables new organism discovery from microbial communities, but it can only capture few abundant organisms from most metagenomes. Here we…”
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The person-to-person transmission landscape of the gut and oral microbiomes by Valles-Colomer, Mireia, Blanco-Míguez, Aitor, Manghi, Paolo, Asnicar, Francesco, Dubois, Leonard, Golzato, Davide, Armanini, Federica, Cumbo, Fabio, Huang, Kun D., Manara, Serena, Masetti, Giulia, Pinto, Federica, Piperni, Elisa, Punčochář, Michal, Ricci, Liviana, Zolfo, Moreno, Farrant, Olivia, Goncalves, Adriana, Selma-Royo, Marta, Binetti, Ana G., Becerra, Jimmy E., Han, Bei, Lusingu, John, Amuasi, John, Amoroso, Loredana, Visconti, Alessia, Steves, Claire M., Falchi, Mario, Filosi, Michele, Tett, Adrian, Last, Anna, Xu, Qian, Qin, Nan, Qin, Huanlong, May, Jürgen, Eibach, Daniel, Corrias, Maria Valeria, Ponzoni, Mirco, Pasolli, Edoardo, Spector, Tim D., Domenici, Enrico, Collado, Maria Carmen, Segata, Nicola

“…The human microbiome is an integral component of the human body and a co-determinant of several health conditions 1 , 2 . However, the extent to which…”
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The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations by Tett, Adrian, Huang, Kun D., Asnicar, Francesco, Fehlner-Peach, Hannah, Pasolli, Edoardo, Karcher, Nicolai, Armanini, Federica, Manghi, Paolo, Bonham, Kevin, Zolfo, Moreno, De Filippis, Francesca, Magnabosco, Cara, Bonneau, Richard, Lusingu, John, Amuasi, John, Reinhard, Karl, Rattei, Thomas, Boulund, Fredrik, Engstrand, Lars, Zink, Albert, Collado, Maria Carmen, Littman, Dan R., Eibach, Daniel, Ercolini, Danilo, Rota-Stabelli, Omar, Huttenhower, Curtis, Maixner, Frank, Segata, Nicola

“…Prevotella copri is a common human gut microbe that has been both positively and negatively associated with host health. In a cross-continent meta-analysis…”
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Rates of Mutation and Recombination in Siphoviridae Phage Genome Evolution over Three Decades by Kupczok, Anne, Neve, Horst, Huang, Kun D, Hoeppner, Marc P, Heller, Knut J, Franz, Charles M A P, Dagan, Tal

“…The evolution of asexual organisms is driven not only by the inheritance of genetic modification but also by the acquisition of foreign DNA. The contribution…”
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Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population by Manara, Serena, Selma-Royo, Marta, Huang, Kun D., Asnicar, Francesco, Armanini, Federica, Blanco-Miguez, Aitor, Cumbo, Fabio, Golzato, Davide, Manghi, Paolo, Pinto, Federica, Valles-Colomer, Mireia, Amoroso, Loredana, Corrias, Maria Valeria, Ponzoni, Mirco, Raffaetà, Roberta, Cabrera-Rubio, Raul, Olcina, Mari, Pasolli, Edoardo, Collado, Maria Carmen, Segata, Nicola

“…The human microbiome seeding starts at birth, when pioneer microbes are acquired mainly from the mother. Mode of delivery, antibiotic prophylaxis, and feeding…”
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Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period by Maixner, Frank, Sarhan, Mohamed S., Huang, Kun D., Tett, Adrian, Schoenafinger, Alexander, Zingale, Stefania, Blanco-Míguez, Aitor, Manghi, Paolo, Cemper-Kiesslich, Jan, Rosendahl, Wilfried, Kusebauch, Ulrike, Morrone, Seamus R., Hoopmann, Michael R., Rota-Stabelli, Omar, Rattei, Thomas, Moritz, Robert L., Oeggl, Klaus, Segata, Nicola, Zink, Albert, Reschreiter, Hans, Kowarik, Kerstin

“…We subjected human paleofeces dating from the Bronze Age to the Baroque period (18th century AD) to in-depth microscopic, metagenomic, and proteomic analyses…”
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Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions by Blanco-Míguez, Aitor, Gálvez, Eric J.C., Pasolli, Edoardo, De Filippis, Francesca, Amend, Lena, Huang, Kun D., Manghi, Paolo, Lesker, Till-Robin, Riedel, Thomas, Cova, Linda, Punčochář, Michal, Thomas, Andrew Maltez, Valles-Colomer, Mireia, Schober, Isabel, Hitch, Thomas C.A., Clavel, Thomas, Berry, Sarah E., Davies, Richard, Wolf, Jonathan, Spector, Tim D., Overmann, Jörg, Tett, Adrian, Ercolini, Danilo, Segata, Nicola, Strowig, Till

“…The Segatella copri (formerly Prevotella copri) complex (ScC) comprises taxa that are key members of the human gut microbiome. It was previously described to…”
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Establishment of a non-Westernized gut microbiota in men who have sex with men is associated with sexual practices by Huang, Kun D., Amend, Lena, Gálvez, Eric J.C., Lesker, Till-Robin, de Oliveira, Romulo, Bielecka, Agata, Blanco-Míguez, Aitor, Valles-Colomer, Mireia, Ruf, Isabel, Pasolli, Edoardo, Buer, Jan, Segata, Nicola, Esser, Stefan, Strowig, Till, Kehrmann, Jan

“…The human gut microbiota is influenced by various factors, including health status and environmental conditions, yet considerable inter-individual differences…”
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Reconstruction of ancient microbial genomes from the human gut by Wibowo, Marsha C., Yang, Zhen, Borry, Maxime, Hübner, Alexander, Huang, Kun D., Tierney, Braden T., Zimmerman, Samuel, Barajas-Olmos, Francisco, Contreras-Cubas, Cecilia, García-Ortiz, Humberto, Martínez-Hernández, Angélica, Luber, Jacob M., Kirstahler, Philipp, Blohm, Tre, Smiley, Francis E., Arnold, Richard, Ballal, Sonia A., Pamp, Sünje Johanna, Russ, Julia, Maixner, Frank, Rota-Stabelli, Omar, Segata, Nicola, Reinhard, Karl, Orozco, Lorena, Warinner, Christina, Snow, Meradeth, LeBlanc, Steven, Kostic, Aleksandar D.

“…Loss of gut microbial diversity 1 – 6 in industrial populations is associated with chronic diseases 7 , underscoring the importance of studying our ancestral…”
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Application of Ultrasonography in the Diagnosis and Management of Papillary Thyroid Microcarcinoma by Kun, Huang, MD, Ji-Bin, Liu, MD

“…Thyroid carcinoma is the most common malignant tumor of the endocrine system. Nearly 90% of thyroid carcinomas are papillary type, of which many are thyroid…”
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Early Cardiovascular Disease After the Diagnosis of Systemic Sclerosis by Aviña-Zubieta, J. Antonio, MD, PhD, Man, Ada, MD, Yurkovich, Marko, MD, Huang, Kun, MD, Sayre, Eric C., PhD, Choi, Hyon K., MD, DrPH

“…Abstract Purpose The purpose of this study is to assess risk and time trends of newly recorded myocardial infarction and stroke in cases with systemic…”
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Use of Masquelet’s technique for treating the first metatarsophalangeal joint in cases of gout combined with a massive bone defect by Feng, Liu, Ruo-kun, Huang, MD, Ming, Xie, Hao, Pan, Jing-jing, Zhao, Bo, Lei

“…Highlights • To examine the safety and efficacy of Masquelet’s technique as a surgical method for treating the first metatarsophalangeal joint in cases of gout…”
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Inhibition of Na-K-Cl cotransporter isoform 1 reduces lung injury induced by ischemia–reperfusion by Lan, Chou-Chin, MD, PhD, Peng, Chung-Kan, MD, PhD, Tang, Shih-En, MD, PhD, Lin, Hsueh-Ju, MS, PhD, Yang, Sung-Sen, MD, PhD, Wu, Chin-Pyng, MD, PhD, Huang, Kun-Lun, MD, PhD

“…Abstract Objectives Ischemia–reperfusion acute lung injury is characterized by increased vascular permeability, lung edema, and neutrophil sequestration…”
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Functional Outcome in Acute Stroke Patients with Oropharyngeal Dysphagia after Swallowing Therapy by Huang, Kun-Ling, MD, Liu, Ting-Yuan, MD, Huang, Yu-Chi, MD, Leong, Chau-Peng, MD, Lin, Wei-Che, MD, PhD, Pong, Ya-Ping, MD

“…Dysphagia after stroke is associated with mortality and increased pulmonary complications. Swallowing therapies may decrease pulmonary complications and…”
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Derivation and validation of a scoring system for predicting nonalcoholic steatohepatitis in Taiwanese patients with severe obesity by Tai, Chi-Ming, MD, PhD, Yu, Ming-Lung, MD, PhD, Tu, Hung-Pin, PhD, Huang, Chih-Kun, MD, Hwang, Jau-Chung, MD, Chuang, Wan-Long, MD, PhD

“…Abstract Background Nonalcoholic steatohepatitis (NASH) is common in severely obese Asians and may progress to advanced liver disease. Although invasive, liver…”
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Cancer Incidence Trend in Chinese Longevity Town Cenxi City from 2016 to 2020 by WU Fanying, LYU Wu, DU Kun, ZHOU Jingfan, HUANG Guolin, FENG Jie

“…Background Along with the acceleration of population aging and the increase in average life expectancy, how to improve the quality of life of residents has…”
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Hypercapnic acidosis prolongs survival of skin allografts by Tzeng, Yuan-Sheng, MD, Wu, Shu-Yu, PhD, Peng, Yi-Jen, MD, Cheng, Chia-Pi, PhD, Tang, Shih-En, MD, PhD, Huang, Kun-Lun, MD, PhD, Chu, Shi-Jye, MD

“…Abstract Background Evidence reveals that hypercapnic acidosis (HCA) modulates immune responses. However, the effect of HCA on allogenic skin graft rejection…”
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