Search Results - "Huala, E."

Arabidopsis Information Resource (TAIR): gene structure and function annotation by Swarbreck, David, Wilks, Christopher, Lamesch, Philippe, Berardini, Tanya Z, Garcia-Hernandez, Margarita, Foerster, Hartmut, Li, Donghui, Meyer, Tom, Muller, Robert, Ploetz, Larry, Radenbaugh, Amie, Singh, Shanker, Swing, Vanessa, Tissier, Christophe, Zhang, Peifen, Huala, Eva

“…The Arabidopsis Information Resource (TAIR, http://arabidopsis.org) is the model organism database for the fully sequenced and intensively studied model plant…”
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The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant by Huala, E, Dickerman, A W, Garcia-Hernandez, M, Weems, D, Reiser, L, LaFond, F, Hanley, D, Kiphart, D, Zhuang, M, Huang, W, Mueller, L A, Bhattacharyya, D, Bhaya, D, Sobral, B W, Beavis, W, Meinke, D W, Town, C D, Somerville, C, Rhee, S Y

“…Arabidopsis thaliana, a small annual plant belonging to the mustard family, is the subject of study by an estimated 7000 researchers around the world. In…”
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BLUE-LIGHT PHOTORECEPTORS IN HIGHER PLANTS by Briggs, Winslow R, Huala, Eva

“…In the past few years great progress has been made in identifying and characterizing plant photoreceptors active in the blue/UV-A regions of the spectrum…”
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Building an efficient curation workflow for the Arabidopsis literature corpus by Li, Donghui, Berardini, Tanya Z, Muller, Robert J, Huala, Eva

“…TAIR (The Arabidopsis Information Resource) is the model organism database (MOD) for Arabidopsis thaliana, a model plant with a literature corpus of about 39…”
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Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR by Van Auken, Kimberly, Fey, Petra, Berardini, Tanya Z, Dodson, Robert, Cooper, Laurel, Li, Donghui, Chan, Juancarlos, Li, Yuling, Basu, Siddhartha, Muller, Hans-Michael, Chisholm, Rex, Huala, Eva, Sternberg, Paul W

“…WormBase, dictyBase and The Arabidopsis Information Resource (TAIR) are model organism databases containing information about Caenorhabditis elegans and other…”
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LEAFY interacts with floral homeotic genes to regulate Arabidopsis floral development by Huala, E. (University of California, Berkeley, CA), Sussex, I.M

“…In the leafy mutant of Arabidopsis, most of the lateral meristems that are fated to develop as flowers in a wild-type plant develop as inflorescence branches,…”
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Assessment of community-submitted ontology annotations from a novel database-journal partnership by Berardini, T. Z., Li, D., Muller, R., Chetty, R., Ploetz, L., Singh, S., Wensel, A., Huala, E.

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Determination and cell interactions in reproductive meristems by Huala, E, Sussex, I.M

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The central domain of Rhizobium leguminosarum DctD functions independently to activate transcription by HUALA, E, STIGTER, J, AUSUBEL, F. M

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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The central domain of Rhizobium meliloti NifA is sufficient to activate transcription from the R. meliloti nifH promoter by Huala, E, Ausubel, F.M

“…The Rhizobium meliloti nifA product (NifA) shares extensive homology in its central region and at its C-terminal end with Rhizobium leguminosarum DctD and with…”
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Prokaryotic Signal Transduction Mediated by Sensor and Regulator Protein Pairs by Albright, L M, Huala, E, Ausubel, F M

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The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community by Rhee, Seung Yon, Beavis, William, Berardini, Tanya Z., Chen, Guanghong, Dixon, David, Doyle, Aisling, Garcia-Hernandez, Margarita, Huala, Eva, Lander, Gabriel, Montoya, Mary, Miller, Neil, Mueller, Lukas A., Mundodi, Suparna, Reiser, Leonore, Tacklind, Julie, Weems, Dan C., Wu, Yihe, Xu, Iris, Yoo, Daniel, Yoon, Jungwon, Zhang, Peifen

“…Arabidopsis thaliana is the most widely-studied plant today. The concerted efforts of over 11 000 researchers and 4000 organizations around the world are…”
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Functional annotation of the Arabidopsis genome using controlled vocabularies by Berardini, T.Z, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, L.A, Yoon, J, Doyle, A, Lander, G

“…Controlled vocabularies are increasingly used by databases to describe genes and gene products because they facilitate identification of similar genes within…”
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Text mining for the biocuration workflow by Hirschman, L., Burns, G. A. P. C., Krallinger, M., Arighi, C., Cohen, K. B., Valencia, A., Hu, C. H., Chatr-Aryamontri, A., Dowell, K. G., Huala, E., Lourenço, Anália, Nash, R., Veuthey, A. L., Wiegers, T., Winter, A. G.

“…Molecular biology has become heavily dependent on biological knowledge encoded in expert curated biological databases. As the volume of biological literature…”
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Aerobic inactivation of Rhizobium meliloti NifA in Escherichia coli is mediated by lon and two newly identified genes, snoB and snoC by Huala, E, Moon, A L, Ausubel, F M

“…The Rhizobium meliloti NifA protein is an oxygen-sensitive transcriptional regulator of nitrogen fixation genes. Regulation of NifA activity by oxygen occurs…”
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Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts by Wei, Chih-Hsuan, Harris, Bethany R, Li, Donghui, Berardini, Tanya Z, Huala, Eva, Kao, Hung-Yu, Lu, Zhiyong

“…Today's biomedical research has become heavily dependent on access to the biological knowledge encoded in expert curated biological databases. As the volume of…”
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Arabidopsis NPH1: a protein kinase with a putative redox-sensing domain by Huala, E, Oeller, P.W, Liscum, E, Han, I.S, Larsen, E, Briggs, W.R

“…The NPH1 (nonphototropic hypocotyl 1) gene encodes an essential component acting very early in the signal-transduction chain for phototropism. Arabidopsis NPH1…”
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GFam: a platform for automatic annotation of gene families by Sasidharan, Rajkumar, Nepusz, Tamás, Swarbreck, David, Huala, Eva, Paccanaro, Alberto

“…We have developed GFam, a platform for automatic annotation of gene/protein families. GFam provides a framework for genome initiatives and model organism…”
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Photobiology of diagravitropic maize roots by Mandoli, Dina F., James Tepperman, Huala, Eva, Briggs, Winslow R.

“…Light-induced modification of gravitropism in etiolated roots of Zea mays cv Bear × W38 is a low fluence response mediated by phytochrome. This cultivar has a…”
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Community-based gene structure annotation by Schlueter, Shannon D., Wilkerson, Matthew D., Huala, Eva, Rhee, Seung Y., Brendel, Volker

“…Uncertainty and inconsistency of gene structure annotation remain limitations on research in the genome era, frustrating both biologists and bioinformaticians,…”
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