Search Results - "Hu, Haifei"

Crop breeding for a changing climate: integrating phenomics and genomics with bioinformatics by Marsh, Jacob I., Hu, Haifei, Gill, Mitchell, Batley, Jacqueline, Edwards, David

“…Key message Safeguarding crop yields in a changing climate requires bioinformatics advances in harnessing data from vast phenomics and genomics datasets to…”
Get full text

A pangenome analysis pipeline provides insights into functional gene identification in rice by Wang, Jian, Yang, Wu, Zhang, Shaohong, Hu, Haifei, Yuan, Yuxuan, Dong, Jingfang, Chen, Luo, Ma, Yamei, Yang, Tifeng, Zhou, Lian, Chen, Jiansong, Liu, Bin, Li, Chengdao, Edwards, David, Zhao, Junliang

“…A pangenome aims to capture the complete genetic diversity within a species and reduce bias in genetic analysis inherent in using a single reference genome…”
Get full text

Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003 by Marsh, Jacob I., Hu, Haifei, Petereit, Jakob, Bayer, Philipp E., Valliyodan, Babu, Batley, Jacqueline, Nguyen, Henry T., Edwards, David

“…Key message The major soy protein QTL, cqProt-003, was analysed for haplotype diversity and global distribution, and results indicate 304 bp deletion and…”
Get full text

Advances in Integrating Genomics and Bioinformatics in the Plant Breeding Pipeline by Hu, Haifei, Scheben, Armin, Edwards, David

“…With the global human population growing rapidly, agricultural production must increase to meet crop demand. Improving crops through breeding is a sustainable…”
Get full text

Machine learning models outperform deep learning models, provide interpretation and facilitate feature selection for soybean trait prediction by Gill, Mitchell, Anderson, Robyn, Hu, Haifei, Bennamoun, Mohammed, Petereit, Jakob, Valliyodan, Babu, Nguyen, Henry T, Batley, Jacqueline, Bayer, Philipp E, Edwards, David

“…Recent growth in crop genomic and trait data have opened opportunities for the application of novel approaches to accelerate crop improvement. Machine learning…”
Get full text

Comparative gene retention analysis in barley, wild emmer, and bread wheat pangenome lines reveals factors affecting gene retention following gene duplication by Jia, Yong, Xu, Mingrui, Hu, Haifei, Chapman, Brett, Watt, Calum, Buerte, B, Han, Ning, Zhu, Muyuan, Bian, Hongwu, Li, Chengdao, Zeng, Zhanghui

“…Gene duplication is a prevalent phenomenon and a major driving force underlying genome evolution. The process leading to the fixation of gene duplicates…”
Get full text

Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding by Bayer, Philipp E., Valliyodan, Babu, Hu, Haifei, Marsh, Jacob I., Yuan, Yuxuan, Vuong, Tri D., Patil, Gunvant, Song, Qijian, Batley, Jacqueline, Varshney, Rajeev K., Lam, Hon‐Ming, Edwards, David, Nguyen, Henry T.

“…The gene content of plants varies between individuals of the same species due to gene presence/absence variation, and selection can alter the frequency of…”
Get full text

Hetero-bonding strength investigation into opto-mechanical interface by Hu, Haifei, Zhou, Di, Zhao, Chenchen, Qi, Erhui, Luo, Xiao

“…Glass-metal hetero-bonding through optical epoxy adhesive is frequently used in opto-mechanics and requires high stability. However, the bonding stability is…”
Get full text

Design and Fabrication of Extremely Lightweight Truss-Structured Metal Mirrors by Liu, Chen, Xu, Kai, Zhang, Yongqi, Hu, Haifei, Tao, Xiaoping, Zhang, Zhiyu, Deng, Weijie, Zhang, Xuejun

“…Three-dimensional printing, also called additive manufacturing (AM), offers a new vision for optical components in terms of weight reduction and strength…”
Get full text

High-quality wild barley genome assemblies and annotation with Nanopore long reads and Hi-C sequencing data by Pan, Rui, Hu, Haifei, Xiao, Yuhui, Xu, Le, Xu, Yanhao, Ouyang, Kai, Li, Chengdao, He, Tianhua, Zhang, Wenying

“…Wild barley, from “Evolution Canyon (EC)” in Mount Carmel, Israel, are ideal models for cereal chromosome evolution studies. Here, the wild barley EC_S1 is…”
Get full text

Wheat Panache: A pangenome graph database representing presence–absence variation across sixteen bread wheat genomes by Bayer, Philipp E., Petereit, Jakob, Durant, Éloi, Monat, Cécile, Rouard, Mathieu, Hu, Haifei, Chapman, Brett, Li, Chengdao, Cheng, Shifeng, Batley, Jacqueline, Edwards, David

“…Bread wheat (Triticum aestivum L.) is one of humanity's most important staple crops, characterized by a large and complex genome with a high level of gene…”
Get full text

Plant pangenomics, current practice and future direction by Haifei Hu, Jian Wang, Shuai Nie, Junliang Zhao, Jacqueline Batley, David Edwards

“…A pangenome encompasses the complete genetic diversity of a species, by assembling a range of representative individuals from various populations. This review…”
Get full text

High-quality genome assembly and comparative genomic profiling of yellowhorn ( Xanthoceras sorbifolia ) revealed environmental adaptation footprints and seed oil contents variations by Wang, Juan, Hu, Haifei, Liang, Xizhen, Tahir Ul Qamar, Muhammad, Zhang, Yunxiang, Zhao, Jianguo, Ren, Hongqian, Yan, Xingrong, Ding, Baopeng, Guo, Jinping

“…Yellowhorn ( ) is a species of deciduous tree that is native to Northern and Central China, including Loess Plateau. The yellowhorn tree is a hardy plant,…”
Get full text

GWAS and Transcriptomic Analysis Identify OsRING315 as a New Candidate Gene Controlling Amylose Content and Gel Consistency in Rice by Nie, Shuai, Chen, Luo, Zheng, Minhua, Dong, Jingfang, Ma, Yamei, Zhou, Lian, Wang, Jian, Chen, Jiansong, Hu, Haifei, Yang, Tifeng, Zhao, Junliang, Zhang, Shaohong, Yang, Wu

“…Cooking quality is the main factor determining the market value of rice. Although several major genes and a certain number of QTLs controlling cooking quality…”
Get full text

The Function of SD1 on Shoot Length and its Pyramiding Effect on Shoot Length and Plant Height in Rice (Oryza sativa L.) by Dong, Jingfang, Ma, Yamei, Hu, Haifei, Wang, Jian, Yang, Wu, Fu, Hua, Zhang, Longting, Chen, Jiansong, Zhou, Lian, Li, Wenhui, Nie, Shuai, Liu, Ziqiang, Zhao, Junliang, Liu, Bin, Yang, Tifeng, Zhang, Shaohong

“…Strong seedling vigor is imperative to achieve stable seedling establishment and enhance the competitiveness against weeds in rice direct seeding. Shoot length…”
Get full text

Pangenome-Wide Association Study and Transcriptome Analysis Reveal a Novel QTL and Candidate Genes Controlling both Panicle and Leaf Blast Resistance in Rice by Wang, Jian, Hu, Haifei, Jiang, Xianya, Zhang, Shaohong, Yang, Wu, Dong, Jingfang, Yang, Tifeng, Ma, Yamei, Zhou, Lian, Chen, Jiansong, Nie, Shuai, Liu, Chuanguang, Ning, Yuese, Zhu, Xiaoyuan, Liu, Bin, Yang, Jianyuan, Zhao, Junliang

“…Cultivating rice varieties with robust blast resistance is the most effective and economical way to manage the rice blast disease. However, rice blast disease…”
Get full text

Relay optical function and pre-construction results of a Giant Steerable Science Mirror for a thirty meter telescope by Fei, Yang, Xuejun, Zhang, Hongchao, Zhao, Qichang, An, Peng, Guo, Haibo, Jiang, Haifeng, Cao, Pengfei, Guo, Xiao, Luo, Erhui, Qi, Haifei, Hu, Haixiang, Hu, Jing, Zhang, Chylek, Tomas, Cole, Glen, Cho, Myung, Smith, Byron, Campbell, Marvin

“…The Giant Steerable Science Mirror (GSSM) is the tertiary mirror system of the Thirty Meter Telescope (TMT) that relays optical beams from the secondary mirror…”
Get full text

A Novel Function of GW5 on Controlling the Early Growth Vigor and its Haplotype Effect on Shoot Dry Weight and Grain Size in Rice (Oryza sativa L.) by Yang, Tifeng, Dong, Jingfang, Xiong, Xijuan, Zhang, Longting, Wang, Jian, Hu, Haifei, Zhou, Lian, Yang, Wu, Ma, Yamei, Fu, Hua, Chen, Jiansong, Li, Wenhui, Nie, Shuai, Liu, Ziqiang, Liu, Bin, Wang, Feng, Zhao, Junliang, Zhang, Shaohong

“…Strong early growth vigor is an essential target in both direct seeded rice breeding and high-yielding rice breeding for rice varieties with relatively short…”
Get full text

Mapping of partial resistance to Phytophthora sojae in soybean PIs using whole‐genome sequencing reveals a major QTL by de Ronne, Maxime, Santhanam, Parthasarathy, Cinget, Benjamin, Labbé, Caroline, Lebreton, Amandine, Ye, Heng, Vuong, Tri D., Hu, Haifei, Valliyodan, Babu, Edwards, David, Nguyen, Henry T., Belzile, François, Bélanger, Richard

“…In the last decade, more than 70 quantitative trait loci (QTL) related to soybean [Glycine max (L.) Merr.] partial resistance (PR) against Phytophthora sojae…”
Get full text

Pear genomes display significant genetic diversity and provide novel insights into the fruit quality traits differentiation by Ding, Baopeng, Hu, Haifei, Cao, Yunpeng, Xu, Ruirui, Lin, Yujing, Muhammad, Tahir ul Qamar, Song, Yuqin, He, Guangqi, Han, Youzhi, Guo, Huangping, Qiao, Jun, Zhao, Jianguo, Feng, Xinxin, Yang, Sheng, Guo, Xuhu, Varshney, Rajeev Kumar, Li, Liulin

“…The pear (Pyrus spp.) is well known for diverse flavors, textures, and global horticultural importance. However, the genetic diversity responsible for its…”
Get full text