Search Results - "Hu, Fen Z"

Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species by Donati, Claudio, Hiller, N Luisa, Tettelin, Hervé, Muzzi, Alessandro, Croucher, Nicholas J, Angiuoli, Samuel V, Oggioni, Marco, Dunning Hotopp, Julie C, Hu, Fen Z, Riley, David R, Covacci, Antonello, Mitchell, Tim J, Bentley, Stephen D, Kilian, Morgens, Ehrlich, Garth D, Rappuoli, Rino, Moxon, E Richard, Masignani, Vega

“…Streptococcus pneumoniae is one of the most important causes of microbial diseases in humans. The genomes of 44 diverse strains of S. pneumoniae were analyzed…”
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Generation of genic diversity among Streptococcus pneumoniae strains via horizontal gene transfer during a chronic polyclonal pediatric infection by Hiller, N Luisa, Ahmed, Azad, Powell, Evan, Martin, Darren P, Eutsey, Rory, Earl, Josh, Janto, Benjamin, Boissy, Robert J, Hogg, Justin, Barbadora, Karen, Sampath, Rangarajan, Lonergan, Shaun, Post, J Christopher, Hu, Fen Z, Ehrlich, Garth D

“…Although there is tremendous interest in understanding the evolutionary roles of horizontal gene transfer (HGT) processes that occur during chronic polyclonal…”
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Comparative Genomic Analyses of 17 Clinical Isolates of Gardnerella vaginalis Provide Evidence of Multiple Genetically Isolated Clades Consistent with Subspeciation into Genovars by Ahmed, Azad, Earl, Josh, Retchless, Adam, Hillier, Sharon L, Rabe, Lorna K, Cherpes, Thomas L, Powell, Evan, Janto, Benjamin, Eutsey, Rory, Hiller, N. Luisa, Boissy, Robert, Dahlgren, Margaret E, Hall, Barry G, Costerton, J. William, Post, J. Christopher, Hu, Fen Z, Ehrlich, Garth D

“…Gardnerella vaginalis is associated with a spectrum of clinical conditions, suggesting high degrees of genetic heterogeneity among stains. Seventeen G…”
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Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains by Hogg, Justin S, Hu, Fen Z, Janto, Benjamin, Boissy, Robert, Hayes, Jay, Keefe, Randy, Post, J Christopher, Ehrlich, Garth D

“…The distributed genome hypothesis (DGH) posits that chronic bacterial pathogens utilize polyclonal infection and reassortment of genic characters to ensure…”
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Comparative Genomic Analyses of Seventeen Streptococcus pneumoniae Strains: Insights into the Pneumococcal Supragenome by Hiller, N Luisa, Janto, Benjamin, Hogg, Justin S, Boissy, Robert, Yu, Susan, Powell, Evan, Keefe, Randy, Ehrlich, Nathan E, Shen, Kai, Hayes, Jay, Barbadora, Karen, Klimke, William, Dernovoy, Dmitry, Tatusova, Tatiana, Parkhill, Julian, Bentley, Stephen D, Post, J Christopher, Ehrlich, Garth D, Hu, Fen Z

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Deletion of genes involved in the ketogluconate metabolism, Entner-Doudoroff pathway, and glucose dehydrogenase increase local and invasive virulence phenotypes in Streptococcus pneumoniae by Hu, Fen Z, Król, Jarosław E, Tsai, Chen Hsuan Sherry, Eutsey, Rory A, Hiller, Luisa N, Sen, Bhaswati, Ahmed, Azad, Hillman, Todd, Buchinsky, Farrel J, Nistico, Laura, Dice, Bethany, Longwell, Mark, Horsey, Edward, Ehrlich, Garth D

“…Streptococcus pneumoniae displays increased resistance to antibiotic therapy following biofilm formation. A genome-wide search revealed that SP 0320 and SP…”
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Identification and Characterization of msf, a Novel Virulence Factor in Haemophilus influenzae by Kress-Bennett, Jennifer M, Hiller, N Luisa, Eutsey, Rory A, Powell, Evan, Longwell, Mark J, Hillman, Todd, Blackwell, Tenisha, Byers, Barbara, Mell, Joshua C, Post, J Christopher, Hu, Fen Z, Ehrlich, Garth D, Janto, Benjamin A

“…Haemophilus influenzae is an opportunistic pathogen. The emergence of virulent, non-typeable strains (NTHi) emphasizes the importance of developing new…”
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Insights into the genome of large sulfur bacteria revealed by analysis of single filaments by Mussmann, Marc, Hu, Fen Z, Richter, Michael, de Beer, Dirk, Preisler, André, Jørgensen, Bo B, Huntemann, Marcel, Glöckner, Frank Oliver, Amann, Rudolf, Koopman, Werner J H, Lasken, Roger S, Janto, Benjamin, Hogg, Justin, Stoodley, Paul, Boissy, Robert, Ehrlich, Garth D

“…Marine sediments are frequently covered by mats of the filamentous Beggiatoa and other large nitrate-storing bacteria that oxidize hydrogen sulfide using…”
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In vivo capsular switch in Streptococcus pneumoniae--analysis by whole genome sequencing by Hu, Fen Z, Eutsey, Rory, Ahmed, Azad, Frazao, Nelson, Powell, Evan, Hiller, N Luisa, Hillman, Todd, Buchinsky, Farrel J, Boissy, Robert, Janto, Benjamin, Kress-Bennett, Jennifer, Longwell, Mark, Ezzo, Suzanne, Post, J Christopher, Nesin, Mirjana, Tomasz, Alexander, Ehrlich, Garth D

“…Two multidrug resistant strains of Streptococcus pneumoniae - SV35-T23 (capsular type 23F) and SV36-T3 (capsular type 3) were recovered from the nasopharynx of…”
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Comparative Genomic Analysis of Ten Streptococcus pneumoniae Temperate Bacteriophages by ROMERO, Patricia, CROUCHER, Nicholas J, LUISA HILLER, N, HU, Fen Z, EHRLICH, Garth D, BENTLEY, Stephen D, GARCIA, Ernesto, MITCHELL, Tim J

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Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae using a modification of the finite supragenome model by Boissy, Robert, Ahmed, Azad, Janto, Benjamin, Earl, Josh, Hall, Barry G, Hogg, Justin S, Pusch, Gordon D, Hiller, Luisa N, Powell, Evan, Hayes, Jay, Yu, Susan, Kathju, Sandeep, Stoodley, Paul, Post, J Christopher, Ehrlich, Garth D, Hu, Fen Z

“…Staphylococcus aureus is associated with a spectrum of symbiotic relationships with its human host from carriage to sepsis and is frequently associated with…”
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Comparative analysis and supragenome modeling of twelve Moraxella catarrhalis clinical isolates by Davie, Jeremiah J, Earl, Josh, de Vries, Stefan P W, Ahmed, Azad, Hu, Fen Z, Bootsma, Hester J, Stol, Kim, Hermans, Peter W M, Wadowsky, Robert M, Ehrlich, Garth D, Hays, John P, Campagnari, Anthony A

“…M. catarrhalis is a gram-negative, gamma-proteobacterium and an opportunistic human pathogen associated with otitis media (OM) and exacerbations of chronic…”
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Complete Genome Sequence of Streptococcus pneumoniae Strain ST556, a Multidrug-Resistant Isolate from an Otitis Media Patient by Li, Guiling, Hu, Fen Z, Yang, Xianwei, Cui, Yujun, Yang, Jun, Qu, Fen, Gao, George F, Zhang, Jing-Ren

“…Streptococcus pneumoniae is a major pathogen causing bacterial infection in the middle ear of humans. We previously used S. pneumoniae strain ST556, a…”
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Characterization of Bacterial Communities in Venous Insufficiency Wounds by Use of Conventional Culture and Molecular Diagnostic Methods by TURTLE, Marie S, MOSTOW, Eliot, MUKHERJEE, Pranab, HU, Fen Z, MELTON-KREFT, Rachael, EHRLICH, Garth D, DOWD, Scot E, GHANNOUM, Mahmoud A

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Age of child, more than HPV type, is associated with clinical course in recurrent respiratory papillomatosis by Buchinsky, Farrel J, Donfack, Joseph, Derkay, Craig S, Choi, Sukgi S, Conley, Stephen F, Myer, 3rd, Charles M, McClay, John E, Campisi, Paolo, Wiatrak, Brian J, Sobol, Steven E, Schweinfurth, John M, Tsuji, Domingos H, Hu, Fen Z, Rockette, Howard E, Ehrlich, Garth D, Post, J Christopher

“…RRP is a devastating disease in which papillomas in the airway cause hoarseness and breathing difficulty. The disease is caused by human papillomavirus (HPV) 6…”
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Nanoscale Structural and Mechanical Properties of Nontypeable Haemophilus influenzae Biofilms by TERAN ARCE, Fernando, CARLSON, Ross, MONDS, James, VEEH, Richard, HU, Fen Z, STEWART, Philip S, LAL, Ratnesh, EHRLICH, Garth D, AVCI, Recep

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Development and validation of an Haemophilus influenzae supragenome hybridization (SGH) array for transcriptomic analyses by Janto, Benjamin A, Hiller, N Luisa, Eutsey, Rory A, Dahlgren, Margaret E, Earl, Joshua P, Powell, Evan, Ahmed, Azad, Hu, Fen Z, Ehrlich, Garth D

“…We previously carried out the design and testing of a custom-built Haemophilus influenzae supragenome hybridization (SGH) array that contains probe sequences…”
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Extensive Genomic Plasticity in Pseudomonas aeruginosa Revealed by Identification and Distribution Studies of Novel Genes among Clinical Isolates by Shen, Kai, Sayeed, Sameera, Antalis, Patricia, Gladitz, John, Ahmed, Azad, Dice, Bethany, Janto, Benjamin, Dopico, Richard, Keefe, Randy, Hayes, Jay, Johnson, Sandra, Yu, Sujun, Ehrlich, Nathan, Jocz, Jennifer, Kropp, Laura, Wong, Ray, Wadowsky, Robert M, Slifkin, Malcolm, Preston, Robert A, Erdos, Geza, Post, J. Christopher, Ehrlich, Garth D, Hu, Fen Z

“…The distributed genome hypothesis (DGH) states that each strain within a bacterial species receives a unique distribution of genes from a population-based…”
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The microbiome of chronic rhinosinusitis: culture, molecular diagnostics and biofilm detection by Boase, Sam, Foreman, Andrew, Cleland, Edward, Tan, Lorwai, Melton-Kreft, Rachel, Pant, Harshita, Hu, Fen Z, Ehrlich, Garth D, Wormald, Peter-John

“…Bacteria and fungi are believed to influence mucosal inflammation in chronic rhinosinusitis (CRS). However their presence and relationship to disease is…”
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Identification, Distribution, and Expression of Novel Genes in 10 Clinical Isolates of Nontypeable Haemophilus influenzae by Shen, Kai, Antalis, Patricia, Gladitz, John, Sayeed, Sameera, Ahmed, Azad, Yu, Shujun, Hayes, Jay, Johnson, Sandra, Dice, Bethany, Dopico, Richard, Keefe, Randy, Janto, Benjamin, Chong, William, Goodwin, Joseph, Wadowsky, Robert M, Erdos, Geza, Post, J. Christopher, Ehrlich, Garth D, Hu, Fen Z

“…We hypothesize that Haemophilus influenzae, as a species, possesses a much greater number of genes than that found in any single H. influenzae genome. This…”
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