Search Results - "Howerton, Shelley B"

Recognition and potential mechanisms for replication and erasure of cytosine hydroxymethylation by Hashimoto, Hideharu, Liu, Yiwei, Upadhyay, Anup K, Chang, Yanqi, Howerton, Shelley B, Vertino, Paula M, Zhang, Xing, Cheng, Xiaodong

“…Cytosine residues in mammalian DNA occur in at least three forms, cytosine (C), 5-methylcytosine (M; 5mC) and 5-hydroxymethylcytosine (H; 5hmC). During…”
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Locating Monovalent Cations in the Grooves of B-DNA by Howerton, Shelley B, Sines, Chad C, VanDerveer, Don, Williams, Loren Dean

“…Here we demonstrate that monovalent cations can localize around B-DNA in geometrically regular, sequence-specific sites in oligonucleotide crystals. Positions…”
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High-Resolution Structure of an Extended A-Tract:  [d(CGCAAATTTGCG)]2 by Woods, Kristen Kruger, Maehigashi, Tatsuya, Howerton, Shelley B, Sines, Chad C, Tannenbaum, Sarah, Williams, Loren Dean

“…The crystal structure of [d(CGCAAATTTGCG)]2 has been determined to 1.5 Å resolution, representing the first high-resolution structure of this DNA fragment. The…”
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Cations Mediate B-DNA Conformational Heterogeneity by Sines, Chad C, McFail-Isom, Lori, Howerton, Shelley B, VanDerveer, Don, Williams, Loren Dean

“…We demonstrate that DNA conformation is sensitive to cationic environment. We describe a high resolution (1.2 Å) potassium form of CGCGAATTCGCG, determined…”
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Automated identification of RNA conformational motifs: theory and application to the HM LSU 23S rRNA by Hershkovitz, Eli, Tannenbaum, Emmanuel, Howerton, Shelley B., Sheth, Ajay, Tannenbaum, Allen, Williams, Loren Dean

“…We develop novel methods for recognizing and cataloging conformational states of RNA, and for discovering statistical rules governing those states. We focus on…”
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Monovalent Cations Sequester within the A-Tract Minor Groove of [d(CGCGAATTCGCG)]2 by Woods, Kristen Kruger, McFail-Isom, Lori, Sines, Chad C, Howerton, Shelley B, Stephens, Rasheeda K, Williams, Loren Dean

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Surprising roles of electrostatic interactions in DNA-ligand complexes by Howerton, Shelley B., Nagpal, Akankasha, Dean Williams, Loren

“…The positions of cations in x‐ray structures are modulated by sequence, conformation, and ligand interactions. The goal here is to use x‐ray diffraction to…”
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Strand Breaks in X-Irradiated Crystalline DNA: Alternating CG Oligomers by Razskazovskiy, Yuriy, Debije, Michael G., Howerton, Shelley B., Williams, Loren D., Bernhard, William A.

“…Razskazovskiy, Y., Debije, M. G., Howerton, S. B., Williams, L. D. and Bernhard, W. A. Strand Breaks in X-Irradiated Crystalline DNA: Alternating CG Oligomers…”
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