Search Results - "Howard, Nicholas P."

High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow by Vanderzande, Stijn, Howard, Nicholas P, Cai, Lichun, Da Silva Linge, Cassia, Antanaviciute, Laima, Bink, Marco C A M, Kruisselbrink, Johannes W, Bassil, Nahla, Gasic, Ksenija, Iezzoni, Amy, Van de Weg, Eric, Peace, Cameron

“…High-quality genotypic data is a requirement for many genetic analyses. For any crop, errors in genotype calls, phasing of markers, linkage maps, pedigree…”
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Integration of Infinium and Axiom SNP array data in the outcrossing species Malus × domestica and causes for seemingly incompatible calls by Howard, Nicholas P, Troggio, Michela, Durel, Charles-Eric, Muranty, Hélène, Denancé, Caroline, Bianco, Luca, Tillman, John, van de Weg, Eric

“…Single nucleotide polymorphism (SNP) array technology has been increasingly used to generate large quantities of SNP data for use in genetic studies. As new…”
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DNA profiling with the 20K apple SNP array reveals Malus domestica hybridization and admixture in M. sieversii, M. orientalis, and M. sylvestris genebank accessions by Volk, Gayle M., Peace, Cameron P., Henk, Adam D., Howard, Nicholas P.

“…The USDA-ARS National Plant Germplasm System (NPGS) apple collection in Geneva, NY, USA maintains accessions of the primary Malus domestica (Suckow) Borkh…”
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Genetics of zonal leaf chlorosis and genetic linkage to a major gene regulating skin anthocyanin production (MdMYB1) in the apple (Malus × domestica) cultivar Honeycrisp by Howard, Nicholas P, Tillman, John, Vanderzande, Stijn, Luby, James J

“…'Honeycrisp' is a widely grown and acclaimed apple cultivar that is commonly used in breeding programs. It also has a well-documented tendency to develop the…”
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Correction: Genetics of zonal leaf chlorosis and genetic linkage to a major gene regulating skin anthocyanin production (MdMYB1) in the apple (Malus × domestica) cultivar Honeycrisp by Howard, Nicholas P, Tillman, John, Vanderzande, Stijn, Luby, James J

“…[This corrects the article DOI: 10.1371/journal.pone.0210611.]…”
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Mutational analysis in serial marrow samples during azacitidine treatment in patients with post-transplant relapse of acute myeloid leukemia or myelodysplastic syndromes by Woo, Janghee, Howard, Nicholas P, Storer, Barry E, Fang, Min, Yeung, Cecilia C, Scott, Bart L, Deeg, H Joachim

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Global Regulatory DNA Potentiation by SMARCA4 Propagates to Selective Gene Expression Programs via Domain-Level Remodeling by Lazar, John E., Stehling-Sun, Sandra, Nandakumar, Vivek, Wang, Hao, Chee, Daniel R., Howard, Nicholas P., Acosta, Reyes, Dunn, Douglass, Diegel, Morgan, Neri, Fidencio, Castillo, Andres, Ibarrientos, Sean, Lee, Kristen, Lescano, Ninnia, Van Biber, Ben, Nelson, Jemma, Halow, Jessica, Sandstrom, Richard, Bates, Daniel, Urnov, Fyodor D., Stamatoyannopoulos, John A., Funnell, Alister P.W.

“…The human genome encodes millions of regulatory elements, of which only a small fraction are active within a given cell type. Little is known about the global…”
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Pedigree reconstruction for triploid apple cultivars using single nucleotide polymorphism array data by Howard, Nicholas P., Micheletti, Diego, Luby, James J., Durel, Charles‐Eric, Denancé, Caroline, Muranty, Hélène, Ordidge, Matthew, Albach, Dirk C.

“…Societal Impact Statement Many economically, culturally, and historically important apple cultivars are triploids, which have three copies of each chromosome…”
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Integration of Infinium and Axiom SNP array data in the outcrossing species Malus x domestica and causes for seemingly incompatible calls by Howard, Nicholas P, Troggio, Michela, Durel, Charles-Eric, Muranty, Hélène, Denancé, Caroline, Bianco, Luca, Tillman, John, van de Weg, Eric

“…Single nucleotide polymorphism (SNP) array technology has been increasingly used to generate large quantities of SNP data for use in genetic studies. As new…”
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Rvi4 and Rvi15 are the same apple scab resistance genes by Peil, Andreas, Howard, Nicholas P, Bühlmann-Schütz, Simone, Hiller, Ines, Schouten, Henk, Flachowsky, Henryk, Patocchi, Andrea

“…The apple ( Malus x domestica ) scab ( Venturia inaequalis ) resistance genes Rvi4 and Rvi15 were mapped to a similar region on the top of linkage group 2 and…”
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SNP genotyping Dutch heritage apple cultivars allows for germplasm characterization, curation, and pedigree reconstruction using genotypic data from multiple collection sites across the world by Larsen, Bjarne, van Dooijeweert, Willem, Durel, Charles-Eric, Denancé, Caroline, Rutten, Marcel, Howard, Nicholas P.

“…The curation and preservation of Dutch apple germplasm depends on reliable accession level information. However, many accessions of Dutch heirloom apple…”
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Different Shades of Kale-Approaches to Analyze Kale Variety Interrelations by Hahn, Christoph, Howard, Nicholas P, Albach, Dirk C

“…is a vegetable crop with an amazing morphological diversity. Among the various crops derived from , kale has been in the spotlight globally due to its various…”
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Cultivar fingerprinting and SNP-based pedigree reconstruction in Danish heritage apple cultivars utilizing genotypic data from multiple germplasm collections in the world by Larsen, Bjarne, Howard, Nicholas P, Denancé, C., Durel, C.-E., Pedersen, Carsten, Sätra, Jonas Skytte Af, Garkava-Gustavsson, Larisa, Troggio, Michela, van de Weg, Eric

“…Heirloom Danish apple cultivars are historically and pomologically important, part of the cultural heritage, and have valuable adaptation to regional climate…”
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Genetic diversity of apple heirloom germplasm in Bosnia and Herzegovina, as revealed by SNP markers by Đurić, Gordana, Skytte af Sätra, Jonas, Gaši, Fuad, Konjić, Almira, Flachowsky, Henryk, Howard, Nicholas P., Zeljković, Mirela Kajkut, Garkava-Gustavsson, Larisa

“…The cultivated apple ( Malus domestica Borkh.) is an economically important fruit crop in countries worldwide, including Bosnia and Herzegovina (BIH).The gene…”
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Elucidation and characterization of QTLs for Russet formation on apple fruit in ‘Honeycrisp’-derived breeding germplasm by Powell, Ashley A., Kostick, Sarah A., Howard, Nicholas P., Luby, James J.

“…Russet formation in apples ( Malus domestica Borkh.) is a superficial skin disorder that detracts from fruit appearance and therefore is a breeding target in…”
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A DNA test for high incidence of soft scald and soggy breakdown postharvest disorders in Malus domestica Borkh by Miller, Baylee A., Tillman, John R., Howard, Nicholas P., Kostick, Sarah A., Evans, Kate M., Luby, James J.

“…The ‘Honeycrisp’ apple, an economically important cultivar and breeding parent, is prone to soft scald and soggy breakdown postharvest physiological disorders…”
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A new method to reconstruct the direction of parent-offspring duo relationships using SNP array data and its demonstration on ancient and modern cultivars in the outcrossing species Malus × domestica by Howard, Nicholas P, van de Weg, Eric, Luby, James J

“…Abstract Unordered parent-offspring (PO) relationships are an outstanding issue in pedigree reconstruction studies. Resolution of the order of these…”
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Introgressing blue mold resistance into elite apple germplasm by rapid cycle breeding and foreground and background DNA-informed selection by Luo, Feixiong, Norelli, John L., Howard, Nicholas P., Wisniewski, Michael, Flachowsky, Henryk, Hanke, Magda-Viola, Peace, Cameron

“…Apple blue mold causes significant postharvest economic losses worldwide. A blue mold resistance locus, qM- Pe 3.1, was previously identified on chromosome 3…”
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Comparative analysis of infectious complications with outpatient vs. inpatient care for adults with high-risk myeloid neoplasm receiving intensive induction chemotherapy by Halpern, Anna B., Othus, Megan, Howard, Nicholas P., Hendrie, Paul C., Percival, Mary-Elizabeth M., Hartley, Garrett A., Welch, Verna L., Estey, Elihu H., Walter, Roland B.

“…We recently reported an early hospital discharge (EHD) care strategy following intensive acute myeloid leukemia (AML)-like chemotherapy is safe. To evaluate…”
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Early hospital discharge after intensive induction chemotherapy for adults with acute myeloid leukemia or other high-grade myeloid neoplasm by Halpern, Anna B., Howard, Nicholas P., Othus, Megan, Hendrie, Paul C., Baclig, Nikita V., Buckley, Sarah A., Percival, Mary-Elizabeth M., Becker, Pamela S., Scott, Bart L., Oehler, Vivian G., Gernsheimer, Terry B., Keel, Siobán B., Orozco, Johnnie J., Cassaday, Ryan D., Shustov, Andrei R., Hartley, Garrett A., Welch, Verna L., Estey, Elihu H., Walter, Roland B.

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