Search Results - "Hooykaas, Paul J J"

T-DNA integration in plants results from polymerase-θ-mediated DNA repair by van Kregten, Maartje, de Pater, Sylvia, Romeijn, Ron, van Schendel, Robin, Hooykaas, Paul J. J., Tijsterman, Marcel

“…Agrobacterium tumefaciens is a pathogenic bacterium, which transforms plants by transferring a discrete segment of its DNA, the T-DNA, to plant cells. The…”
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Complete genomic sequence and phylogenomics analysis of Agrobacterium strain AB2/73: a new Rhizobium species with a unique mega-Ti plasmid by Hooykaas, Marjolein J G, Hooykaas, Paul J J

“…The Agrobacterium strain AB2/73 has a unique host range for the induction of crown gall tumors, and contains an exceptionally large, over 500 kbp mega Ti…”
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Agrobacterium -mediated transformation of the filamentous fungus Aspergillus awamori by J Ram, Arthur F, Michielse, Caroline B, J Hooykaas, Paul J, J J van den Hondel, Cees A M

“…Many transformation methods have been developed to introduce DNA into filamentous fungi. One of these methods is Agrobacterium -mediated transformation (AMT)…”
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A PINOID-Dependent Binary Switch in Apical-Basal PIN Polar Targeting Directs Auxin Efflux by Friml, Jiří, Yang, Xiong, Michniewicz, Marta, Weijers, Dolf, Quint, Ab, Tietz, Olaf, Benjamins, René, Pieter B. F. Ouwerkerk, Ljung, Karin, Sandberg, Göran, Paul J. J. Hooykaas, Palme, Klaus, Offringa, Remko

“…Polar transport-dependent local accumulation of auxin provides positional cues for multiple plant patterning processes. This directional auxin flow depends on…”
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Poly(ADP-ribose)polymerases are involved in microhomology mediated back-up non-homologous end joining in Arabidopsis thaliana by Jia, Qi, Dulk-Ras, Amke den, Shen, Hexi, Hooykaas, Paul J. J., de Pater, Sylvia

“…Besides the KU-dependent classical non-homologous end-joining (C-NHEJ) pathway, an alternative NHEJ pathway first identified in mammalian systems, which is…”
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Agrobacterium-mediated transformation as a tool for functional genomics in fungi by Michielse, C.B, Hooykaas, P.J.J, Hondel, C.A.M.J.J. van den, Ram, A.F.J

“…In the era of functional genomics, the need for tools to perform large-scale targeted and random mutagenesis is increasing. A potential tool is…”
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ZFN-mediated gene targeting of the Arabidopsis protoporphyrinogen oxidase gene through Agrobacterium-mediated floral dip transformation by de Pater, Sylvia, Pinas, Johan E, Hooykaas, Paul J J, van der Zaal, Bert J

“…Previously, we showed that ZFN-mediated induction of double-strand breaks (DSBs) at the intended recombination site enhanced the frequency of gene targeting…”
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Gene targeting in polymerase theta‐deficient Arabidopsis thaliana by Tol, Niels, Schendel, Robin, Bos, Alex, Kregten, Maartje, Pater, Sylvia, Hooykaas, Paul J.J., Tijsterman, Marcel

“…SUMMARY Agrobacterium tumefaciens‐mediated transformation has been for decades the preferred tool to generate transgenic plants. During this process, a T‐DNA…”
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Distinct mechanisms for genomic attachment of the 5′ and 3′ ends of Agrobacterium T-DNA in plants by Kralemann, Lejon E. M., de Pater, Sylvia, Shen, Hexi, Kloet, Susan L., van Schendel, Robin, Hooykaas, Paul J. J., Tijsterman, Marcel

“…Agrobacterium tumefaciens , a pathogenic bacterium capable of transforming plants through horizontal gene transfer, is nowadays the preferred vector for plant…”
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Anaplasma phagocytophilum AnkA secreted by type IV secretion system is tyrosine phosphorylated by Abl-1 to facilitate infection by Lin, Mingqun, den Dulk-Ras, Amke, Hooykaas, Paul J.J, Rikihisa, Yasuko

“…Anaplasma phagocytophilum, the agent of human granulocytic anaplasmosis, is an obligate intracellular bacterium of granulocytes. A. phagocytophilum…”
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CRISPR/Cas9-Induced Double-Strand Break Repair in Arabidopsis Nonhomologous End-Joining Mutants by Shen, Hexi, Strunks, Gary D, Klemann, Bart J P M, Hooykaas, Paul J J, de Pater, Sylvia

“…Double-strand breaks (DSBs) are one of the most harmful DNA lesions. Cells utilize two main pathways for DSB repair: homologous recombination (HR) and…”
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ZFN-induced mutagenesis and gene-targeting in Arabidopsis through Agrobacterium-mediated floral dip transformation by de Pater, Sylvia, Neuteboom, Leon W, Pinas, Johan E, Hooykaas, Paul J J, van der Zaal, Bert J

“…Zinc-finger nucleases (ZFNs) are artificial restriction enzymes, custom designed for induction of double-strand breaks (DSBs) at a specific locus. These DSBs…”
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Enhancement of Arabidopsis growth characteristics using genome interrogation with artificial transcription factors by Tol, Niels van, Rolloos, Martijn, Pinas, Johan E, Henkel, Christiaan V, Augustijn, Dieuwertje, Hooykaas, Paul J J, van der Zaal, Bert J

“…The rapidly growing world population has a greatly increasing demand for plant biomass, thus creating a great interest in the development of methods to enhance…”
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Agrobacterium tumefaciens virulence protein VirE3 is a transcriptional activator of the F‐box gene VBF by Niu, Xiaolei, Zhou, Meiliang, Henkel, Christiaan V, Heusden, G. Paul H, Hooykaas, Paul J. J

“…During Agrobacterium tumefaciens‐mediated transformation of plant cells a part of the tumour‐inducing plasmid, T‐DNA, is integrated into the host genome. In…”
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JAZ8 Interacts With VirE3 Attenuating Agrobacterium Mediated Root Tumorigenesis by Li, Shijuan, Xu, Bingliang, Niu, Xiaolei, Lu, Xiang, Cheng, Jianping, Zhou, Meiliang, Hooykaas, Paul J. J.

“…Agrobacterium tumefaciens can cause crown gall tumors by transferring both an oncogenic piece of DNA (T-DNA) and several effector proteins into a wide range of…”
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The SLEEPER genes: a transposase-derived angiosperm-specific gene family by Knip, Marijn, de Pater, Sylvia, Hooykaas, Paul J J

“…DAYSLEEPER encodes a domesticated transposase from the hAT-superfamily, which is essential for development in Arabidopsis thaliana. Little is known about the…”
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Symbiotic phenotypes and translocated effector proteins of the Mesorhizobium loti strain R7A VirB/D4 type IV secretion system by Hubber, Andree, Vergunst, Annette C., Sullivan, John T., Hooykaas, Paul J. J., Ronson, Clive W.

“…Summary The symbiosis island of Mesorhizobium loti strain R7A contains genes with strong similarity to the structural vir genes (virB1‐11; virD4) of…”
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Positive charge is an important feature of the C-terminal transport signal of the VirB/D4-translocated proteins of Agrobacterium by Vergunst, A.C, Lier, M.C.M. van, Dulk-Ras, A. den, Grosse Stuve, T.A, Ouwehand, A, Hooykaas, P.J.J

“…Several human pathogens and the plant pathogen Agrobacterium tumefaciens use a type IV secretion system for translocation of effector proteins into host cells…”
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The genome sequence of hairy root Rhizobium rhizogenes strain LBA9402: Bioinformatics analysis suggests the presence of a new opine system in the agropine Ri plasmid by Hooykaas, Marjolein J. G., Hooykaas, Paul J. J.

“…We report here the complete genome sequence of the Rhizobium rhizogenes (formerly Agrobacterium rhizogenes) strain LBA9402 (NCPPB1855rifR), a pathogenic strain…”
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Genome interrogation for novel salinity tolerant Arabidopsis mutants by Tol, Niels, Pinas, Johan, Schat, Henk, Hooykaas, Paul J. J., Zaal, Bert J.

“…Soil salinity is becoming an increasingly large problem in agriculture. In this study, we have investigated whether a capacity to withstand salinity can be…”
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